Hb_000260_810

Information

Type -
Description -
Location Contig260: 625151-632071
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27078: 625249-625832 , PASA_asmbl_27080: 625326-628499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_810 0.0 - - -
2 Hb_000696_310 0.0928656652 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
3 Hb_022181_020 0.104800407 - - PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase isoform X1 [Jatropha curcas]
4 Hb_181600_010 0.1081478935 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
5 Hb_048476_050 0.1116106718 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
6 Hb_005183_120 0.1121314667 - - protein translocase, putative [Ricinus communis]
7 Hb_002301_230 0.1126121797 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
8 Hb_012794_010 0.1136523867 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
9 Hb_000069_600 0.114219863 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
10 Hb_155764_010 0.1142688886 - - -
11 Hb_001833_110 0.114394646 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004678_050 0.1155182053 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
13 Hb_005092_060 0.116494569 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
14 Hb_001545_080 0.1190259997 - - PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
15 Hb_002842_020 0.119387533 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
16 Hb_002769_050 0.1217910082 - - PREDICTED: endophilin-A1 [Jatropha curcas]
17 Hb_006907_130 0.1223157516 - - unnamed protein product [Coffea canephora]
18 Hb_001360_050 0.1234822503 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
19 Hb_004218_110 0.1237328762 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
20 Hb_002374_100 0.1240480242 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000260_810 Hb_000260_810 Hb_000696_310 Hb_000696_310 Hb_000260_810--Hb_000696_310 Hb_022181_020 Hb_022181_020 Hb_000260_810--Hb_022181_020 Hb_181600_010 Hb_181600_010 Hb_000260_810--Hb_181600_010 Hb_048476_050 Hb_048476_050 Hb_000260_810--Hb_048476_050 Hb_005183_120 Hb_005183_120 Hb_000260_810--Hb_005183_120 Hb_002301_230 Hb_002301_230 Hb_000260_810--Hb_002301_230 Hb_027073_040 Hb_027073_040 Hb_000696_310--Hb_027073_040 Hb_002759_060 Hb_002759_060 Hb_000696_310--Hb_002759_060 Hb_155764_010 Hb_155764_010 Hb_000696_310--Hb_155764_010 Hb_000444_050 Hb_000444_050 Hb_000696_310--Hb_000444_050 Hb_000270_370 Hb_000270_370 Hb_000696_310--Hb_000270_370 Hb_035273_030 Hb_035273_030 Hb_022181_020--Hb_035273_030 Hb_002374_100 Hb_002374_100 Hb_022181_020--Hb_002374_100 Hb_000069_600 Hb_000069_600 Hb_022181_020--Hb_000069_600 Hb_000445_420 Hb_000445_420 Hb_022181_020--Hb_000445_420 Hb_000111_360 Hb_000111_360 Hb_022181_020--Hb_000111_360 Hb_002769_050 Hb_002769_050 Hb_022181_020--Hb_002769_050 Hb_181600_010--Hb_048476_050 Hb_003097_210 Hb_003097_210 Hb_181600_010--Hb_003097_210 Hb_001545_080 Hb_001545_080 Hb_181600_010--Hb_001545_080 Hb_001688_020 Hb_001688_020 Hb_181600_010--Hb_001688_020 Hb_181600_010--Hb_155764_010 Hb_116898_010 Hb_116898_010 Hb_048476_050--Hb_116898_010 Hb_048476_050--Hb_155764_010 Hb_010560_040 Hb_010560_040 Hb_048476_050--Hb_010560_040 Hb_000010_470 Hb_000010_470 Hb_048476_050--Hb_000010_470 Hb_048476_050--Hb_003097_210 Hb_000676_150 Hb_000676_150 Hb_005183_120--Hb_000676_150 Hb_000985_030 Hb_000985_030 Hb_005183_120--Hb_000985_030 Hb_000165_160 Hb_000165_160 Hb_005183_120--Hb_000165_160 Hb_001489_080 Hb_001489_080 Hb_005183_120--Hb_001489_080 Hb_005183_120--Hb_001545_080 Hb_000783_020 Hb_000783_020 Hb_005183_120--Hb_000783_020 Hb_002301_230--Hb_155764_010 Hb_012779_100 Hb_012779_100 Hb_002301_230--Hb_012779_100 Hb_029866_020 Hb_029866_020 Hb_002301_230--Hb_029866_020 Hb_002056_060 Hb_002056_060 Hb_002301_230--Hb_002056_060 Hb_002216_040 Hb_002216_040 Hb_002301_230--Hb_002216_040 Hb_002301_230--Hb_003097_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.65735 1.3772 2.15015 3.18099 1.97991 5.35037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.33584 6.39198 9.3391 7.35879 3.34134

CAGE analysis