Hb_000261_020

Information

Type -
Description -
Location Contig261: 8749-10639
Sequence    

Annotation

kegg
ID rcu:RCOM_1017840
description Chaperone protein dnaJ 20, chloroplast precursor, putative
nr
ID XP_012071095.1
description PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
swissprot
ID Q9SDN0
description Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=1 SV=2
trembl
ID A0A067L4B0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01092 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27223: 8791-10592
cDNA
(Sanger)
(ID:Location)		 045_G01.ab1: 8881-10556 , 048_H11.ab1: 8801-9200

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_020 0.0 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
2 Hb_000729_030 0.0551114492 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
3 Hb_000053_110 0.0696660775 - - conserved hypothetical protein [Ricinus communis]
4 Hb_028697_010 0.0754230523 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
5 Hb_003647_140 0.0801630163 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
6 Hb_000614_160 0.0815430935 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
7 Hb_000976_120 0.0817767894 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
8 Hb_000336_150 0.0820942722 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
9 Hb_000699_030 0.0822955127 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
10 Hb_001946_400 0.0840679293 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
11 Hb_000869_080 0.0849300974 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
12 Hb_000137_040 0.0860973766 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
13 Hb_005271_220 0.0869457954 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
14 Hb_014834_150 0.0873248727 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_005496_140 0.0880590438 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012395_230 0.0884350821 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
17 Hb_000375_350 0.0884716786 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
18 Hb_003513_010 0.090126002 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
19 Hb_002235_250 0.0903202775 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
20 Hb_001163_050 0.0904153361 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000261_020 Hb_000261_020 Hb_000729_030 Hb_000729_030 Hb_000261_020--Hb_000729_030 Hb_000053_110 Hb_000053_110 Hb_000261_020--Hb_000053_110 Hb_028697_010 Hb_028697_010 Hb_000261_020--Hb_028697_010 Hb_003647_140 Hb_003647_140 Hb_000261_020--Hb_003647_140 Hb_000614_160 Hb_000614_160 Hb_000261_020--Hb_000614_160 Hb_000976_120 Hb_000976_120 Hb_000261_020--Hb_000976_120 Hb_000869_080 Hb_000869_080 Hb_000729_030--Hb_000869_080 Hb_000336_150 Hb_000336_150 Hb_000729_030--Hb_000336_150 Hb_013358_040 Hb_013358_040 Hb_000729_030--Hb_013358_040 Hb_003124_150 Hb_003124_150 Hb_000729_030--Hb_003124_150 Hb_010368_010 Hb_010368_010 Hb_000729_030--Hb_010368_010 Hb_000866_010 Hb_000866_010 Hb_000053_110--Hb_000866_010 Hb_004970_190 Hb_004970_190 Hb_000053_110--Hb_004970_190 Hb_012395_230 Hb_012395_230 Hb_000053_110--Hb_012395_230 Hb_005271_220 Hb_005271_220 Hb_000053_110--Hb_005271_220 Hb_010222_020 Hb_010222_020 Hb_000053_110--Hb_010222_020 Hb_001252_130 Hb_001252_130 Hb_028697_010--Hb_001252_130 Hb_005496_140 Hb_005496_140 Hb_028697_010--Hb_005496_140 Hb_001902_030 Hb_001902_030 Hb_028697_010--Hb_001902_030 Hb_000375_350 Hb_000375_350 Hb_028697_010--Hb_000375_350 Hb_002235_250 Hb_002235_250 Hb_028697_010--Hb_002235_250 Hb_014834_150 Hb_014834_150 Hb_003647_140--Hb_014834_150 Hb_000373_050 Hb_000373_050 Hb_003647_140--Hb_000373_050 Hb_003938_090 Hb_003938_090 Hb_003647_140--Hb_003938_090 Hb_003647_140--Hb_000976_120 Hb_003513_010 Hb_003513_010 Hb_003647_140--Hb_003513_010 Hb_001946_400 Hb_001946_400 Hb_003647_140--Hb_001946_400 Hb_007389_010 Hb_007389_010 Hb_000614_160--Hb_007389_010 Hb_000260_030 Hb_000260_030 Hb_000614_160--Hb_000260_030 Hb_000614_160--Hb_005496_140 Hb_012019_010 Hb_012019_010 Hb_000614_160--Hb_012019_010 Hb_000614_220 Hb_000614_220 Hb_000614_160--Hb_000614_220 Hb_002046_180 Hb_002046_180 Hb_000614_160--Hb_002046_180 Hb_001472_100 Hb_001472_100 Hb_000976_120--Hb_001472_100 Hb_003878_090 Hb_003878_090 Hb_000976_120--Hb_003878_090 Hb_002641_060 Hb_002641_060 Hb_000976_120--Hb_002641_060 Hb_000976_120--Hb_014834_150 Hb_000579_120 Hb_000579_120 Hb_000976_120--Hb_000579_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.621 49.6657 61.8324 56.667 49.616 45.4311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.7464 90.6502 50.3957 30.0551 70.8954

CAGE analysis