Hb_000261_110

Information

Type -
Description -
Location Contig261: 75626-82991
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08450g
description methionyl-tRNA synthetase family protein
nr
ID XP_012071110.1
description PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
swissprot
ID Q9ZTS1
description Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2
trembl
ID A0A067KT86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01104 PE=3 SV=1
Gene Ontology
ID GO:0005737
description probable methionine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27244: 81042-81601 , PASA_asmbl_27245: 75659-82979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_110 0.0 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
2 Hb_001357_380 0.1019923514 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_000313_300 0.1049710128 - - PREDICTED: F-box protein SKIP19-like [Jatropha curcas]
4 Hb_000661_160 0.107181422 - - hexokinase [Manihot esculenta]
5 Hb_017259_010 0.1076986041 - - -
6 Hb_012799_110 0.1088116488 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
7 Hb_033095_020 0.1104670402 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000106_130 0.1111809626 - - unnamed protein product [Vitis vinifera]
9 Hb_001380_020 0.1113814544 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
10 Hb_000211_110 0.1139734148 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
11 Hb_070739_010 0.1143498554 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
12 Hb_009111_040 0.1173889361 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
13 Hb_007643_050 0.1187341785 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_009222_010 0.1204337279 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_009838_130 0.120720594 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
16 Hb_001142_050 0.1222023613 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
17 Hb_000785_030 0.1256763641 - - hypothetical protein RCOM_0808030 [Ricinus communis]
18 Hb_003467_010 0.1260490803 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
19 Hb_011848_010 0.1294054596 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
20 Hb_008518_050 0.1296167919 - - hypothetical protein F383_31148 [Gossypium arboreum]

Gene co-expression network

sample Hb_000261_110 Hb_000261_110 Hb_001357_380 Hb_001357_380 Hb_000261_110--Hb_001357_380 Hb_000313_300 Hb_000313_300 Hb_000261_110--Hb_000313_300 Hb_000661_160 Hb_000661_160 Hb_000261_110--Hb_000661_160 Hb_017259_010 Hb_017259_010 Hb_000261_110--Hb_017259_010 Hb_012799_110 Hb_012799_110 Hb_000261_110--Hb_012799_110 Hb_033095_020 Hb_033095_020 Hb_000261_110--Hb_033095_020 Hb_000211_110 Hb_000211_110 Hb_001357_380--Hb_000211_110 Hb_000059_140 Hb_000059_140 Hb_001357_380--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_001357_380--Hb_011942_080 Hb_000106_130 Hb_000106_130 Hb_001357_380--Hb_000106_130 Hb_001486_340 Hb_001486_340 Hb_001357_380--Hb_001486_340 Hb_001894_030 Hb_001894_030 Hb_001357_380--Hb_001894_030 Hb_000313_300--Hb_000106_130 Hb_097783_020 Hb_097783_020 Hb_000313_300--Hb_097783_020 Hb_000313_300--Hb_000211_110 Hb_000313_300--Hb_001357_380 Hb_000785_030 Hb_000785_030 Hb_000313_300--Hb_000785_030 Hb_006916_040 Hb_006916_040 Hb_000313_300--Hb_006916_040 Hb_000661_160--Hb_000211_110 Hb_009111_040 Hb_009111_040 Hb_000661_160--Hb_009111_040 Hb_000661_160--Hb_000313_300 Hb_000661_160--Hb_000106_130 Hb_004032_060 Hb_004032_060 Hb_000661_160--Hb_004032_060 Hb_009838_130 Hb_009838_130 Hb_017259_010--Hb_009838_130 Hb_001158_220 Hb_001158_220 Hb_017259_010--Hb_001158_220 Hb_007643_050 Hb_007643_050 Hb_017259_010--Hb_007643_050 Hb_025236_040 Hb_025236_040 Hb_017259_010--Hb_025236_040 Hb_004447_030 Hb_004447_030 Hb_017259_010--Hb_004447_030 Hb_000529_080 Hb_000529_080 Hb_017259_010--Hb_000529_080 Hb_012799_110--Hb_011942_080 Hb_000394_190 Hb_000394_190 Hb_012799_110--Hb_000394_190 Hb_003849_060 Hb_003849_060 Hb_012799_110--Hb_003849_060 Hb_011848_010 Hb_011848_010 Hb_012799_110--Hb_011848_010 Hb_012799_110--Hb_033095_020 Hb_003467_010 Hb_003467_010 Hb_012799_110--Hb_003467_010 Hb_000140_080 Hb_000140_080 Hb_033095_020--Hb_000140_080 Hb_033095_020--Hb_000394_190 Hb_001168_040 Hb_001168_040 Hb_033095_020--Hb_001168_040 Hb_008511_030 Hb_008511_030 Hb_033095_020--Hb_008511_030 Hb_002025_110 Hb_002025_110 Hb_033095_020--Hb_002025_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3375 18.4306 15.9663 9.56021 25.5094 28.9251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4082 15.7484 3.55556 5.90106 4.82062

CAGE analysis