Hb_000261_140

Information

Type -
Description -
Location Contig261: 101348-106602
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27246: 101423-106516
cDNA
(Sanger)
(ID:Location)		 025_N06.ab1: 103562-106005

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_140 0.0 - - -
2 Hb_010175_040 0.0522743892 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
3 Hb_001123_130 0.0529416078 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000920_110 0.0618905874 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
5 Hb_001484_070 0.06209352 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000638_250 0.0644649644 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_004143_150 0.0680220092 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
8 Hb_000527_060 0.0687888831 - - Protein C20orf11, putative [Ricinus communis]
9 Hb_000102_020 0.0700578215 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
10 Hb_000417_360 0.0727045354 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
11 Hb_000805_240 0.0737135561 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
12 Hb_004899_370 0.0737385032 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
13 Hb_002995_020 0.0744137689 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
14 Hb_000086_280 0.0749347727 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
15 Hb_000571_020 0.0754027902 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
16 Hb_000340_570 0.0756556575 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
17 Hb_007441_040 0.0787883481 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
18 Hb_000189_240 0.0797809442 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
19 Hb_000001_060 0.0803510888 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
20 Hb_001776_160 0.0810101658 - - 20S proteasome alpha subunit G1 [Theobroma cacao]

Gene co-expression network

sample Hb_000261_140 Hb_000261_140 Hb_010175_040 Hb_010175_040 Hb_000261_140--Hb_010175_040 Hb_001123_130 Hb_001123_130 Hb_000261_140--Hb_001123_130 Hb_000920_110 Hb_000920_110 Hb_000261_140--Hb_000920_110 Hb_001484_070 Hb_001484_070 Hb_000261_140--Hb_001484_070 Hb_000638_250 Hb_000638_250 Hb_000261_140--Hb_000638_250 Hb_004143_150 Hb_004143_150 Hb_000261_140--Hb_004143_150 Hb_010175_040--Hb_000920_110 Hb_143496_010 Hb_143496_010 Hb_010175_040--Hb_143496_010 Hb_000417_360 Hb_000417_360 Hb_010175_040--Hb_000417_360 Hb_001141_140 Hb_001141_140 Hb_010175_040--Hb_001141_140 Hb_001616_040 Hb_001616_040 Hb_010175_040--Hb_001616_040 Hb_000527_060 Hb_000527_060 Hb_001123_130--Hb_000527_060 Hb_000667_070 Hb_000667_070 Hb_001123_130--Hb_000667_070 Hb_002995_020 Hb_002995_020 Hb_001123_130--Hb_002995_020 Hb_000656_240 Hb_000656_240 Hb_001123_130--Hb_000656_240 Hb_001123_130--Hb_001484_070 Hb_003226_100 Hb_003226_100 Hb_000920_110--Hb_003226_100 Hb_002056_050 Hb_002056_050 Hb_000920_110--Hb_002056_050 Hb_000920_110--Hb_001484_070 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_000920_110--Hb_001616_040 Hb_000453_120 Hb_000453_120 Hb_001484_070--Hb_000453_120 Hb_001979_040 Hb_001979_040 Hb_001484_070--Hb_001979_040 Hb_001085_120 Hb_001085_120 Hb_001484_070--Hb_001085_120 Hb_001484_070--Hb_002056_050 Hb_152784_010 Hb_152784_010 Hb_000638_250--Hb_152784_010 Hb_000103_320 Hb_000103_320 Hb_000638_250--Hb_000103_320 Hb_007044_120 Hb_007044_120 Hb_000638_250--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000638_250--Hb_006831_120 Hb_004696_080 Hb_004696_080 Hb_000638_250--Hb_004696_080 Hb_004899_370 Hb_004899_370 Hb_004143_150--Hb_004899_370 Hb_000001_060 Hb_000001_060 Hb_004143_150--Hb_000001_060 Hb_004143_150--Hb_000920_110 Hb_004127_020 Hb_004127_020 Hb_004143_150--Hb_004127_020 Hb_006615_240 Hb_006615_240 Hb_004143_150--Hb_006615_240 Hb_004102_110 Hb_004102_110 Hb_004143_150--Hb_004102_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4463 11.3221 19.8786 20.8197 13.7066 17.2769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.3793 49.6705 30.9456 14.1541 10.587

CAGE analysis