Hb_000261_180

Information

Type -
Description -
Location Contig261: 141957-143495
Sequence    

Annotation

kegg
ID tcc:TCM_014940
description Tetratricopeptide repeat-like superfamily protein, putative isoform 1
nr
ID XP_007038409.1
description Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
swissprot
ID Q9LVA2
description Pentatricopeptide repeat-containing protein At5g62370 OS=Arabidopsis thaliana GN=At5g62370 PE=2 SV=1
trembl
ID A0A061G037
description Tetratricopeptide repeat-like superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_014940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27258: 142641-143011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_180 0.0 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
2 Hb_003477_010 0.1142791686 - - hypothetical protein JCGZ_21107 [Jatropha curcas]
3 Hb_001930_050 0.149567569 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
4 Hb_000069_160 0.1562305247 - - -
5 Hb_002217_310 0.1564006057 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
6 Hb_033642_110 0.1590196212 - - PREDICTED: MLO-like protein 4 [Jatropha curcas]
7 Hb_012753_130 0.1593283565 - - conserved hypothetical protein [Ricinus communis]
8 Hb_155375_010 0.1634073951 - - hypothetical protein JCGZ_23388 [Jatropha curcas]
9 Hb_000343_160 0.1658694477 - - PREDICTED: protein SYS1 homolog [Jatropha curcas]
10 Hb_000032_620 0.1658899039 - - hypothetical protein RCOM_1311830 [Ricinus communis]
11 Hb_034506_010 0.1660997312 - - PREDICTED: protein OS-9 homolog [Jatropha curcas]
12 Hb_004310_020 0.1696147538 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
13 Hb_003589_090 0.1696559345 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
14 Hb_006909_030 0.1710585746 - - 40S ribosomal protein S17B [Hevea brasiliensis]
15 Hb_023001_050 0.1736376444 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
16 Hb_003502_080 0.1742076612 - - vacuolar protein sorting, putative [Ricinus communis]
17 Hb_002400_070 0.1742862776 transcription factor TF Family: AUX/IAA PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Jatropha curcas]
18 Hb_005565_040 0.1761283617 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011257_010 0.1765394683 - - -
20 Hb_001769_080 0.1770123626 - - hypothetical protein SORBIDRAFT_10g023200 [Sorghum bicolor]

Gene co-expression network

sample Hb_000261_180 Hb_000261_180 Hb_003477_010 Hb_003477_010 Hb_000261_180--Hb_003477_010 Hb_001930_050 Hb_001930_050 Hb_000261_180--Hb_001930_050 Hb_000069_160 Hb_000069_160 Hb_000261_180--Hb_000069_160 Hb_002217_310 Hb_002217_310 Hb_000261_180--Hb_002217_310 Hb_033642_110 Hb_033642_110 Hb_000261_180--Hb_033642_110 Hb_012753_130 Hb_012753_130 Hb_000261_180--Hb_012753_130 Hb_005565_040 Hb_005565_040 Hb_003477_010--Hb_005565_040 Hb_173178_020 Hb_173178_020 Hb_003477_010--Hb_173178_020 Hb_023001_050 Hb_023001_050 Hb_003477_010--Hb_023001_050 Hb_001769_080 Hb_001769_080 Hb_003477_010--Hb_001769_080 Hb_003995_010 Hb_003995_010 Hb_003477_010--Hb_003995_010 Hb_006921_030 Hb_006921_030 Hb_001930_050--Hb_006921_030 Hb_002119_060 Hb_002119_060 Hb_001930_050--Hb_002119_060 Hb_039837_010 Hb_039837_010 Hb_001930_050--Hb_039837_010 Hb_109092_010 Hb_109092_010 Hb_001930_050--Hb_109092_010 Hb_000204_040 Hb_000204_040 Hb_001930_050--Hb_000204_040 Hb_031089_010 Hb_031089_010 Hb_001930_050--Hb_031089_010 Hb_050455_010 Hb_050455_010 Hb_000069_160--Hb_050455_010 Hb_000069_160--Hb_002217_310 Hb_002982_040 Hb_002982_040 Hb_000069_160--Hb_002982_040 Hb_003847_080 Hb_003847_080 Hb_000069_160--Hb_003847_080 Hb_000849_070 Hb_000849_070 Hb_000069_160--Hb_000849_070 Hb_003502_080 Hb_003502_080 Hb_000069_160--Hb_003502_080 Hb_141131_010 Hb_141131_010 Hb_002217_310--Hb_141131_010 Hb_002217_310--Hb_000849_070 Hb_001124_210 Hb_001124_210 Hb_002217_310--Hb_001124_210 Hb_021409_020 Hb_021409_020 Hb_002217_310--Hb_021409_020 Hb_002217_310--Hb_003847_080 Hb_003589_090 Hb_003589_090 Hb_033642_110--Hb_003589_090 Hb_033642_110--Hb_002217_310 Hb_001090_040 Hb_001090_040 Hb_033642_110--Hb_001090_040 Hb_033642_110--Hb_021409_020 Hb_033642_110--Hb_000849_070 Hb_018790_030 Hb_018790_030 Hb_033642_110--Hb_018790_030 Hb_002961_060 Hb_002961_060 Hb_012753_130--Hb_002961_060 Hb_000413_010 Hb_000413_010 Hb_012753_130--Hb_000413_010 Hb_000227_240 Hb_000227_240 Hb_012753_130--Hb_000227_240 Hb_011794_040 Hb_011794_040 Hb_012753_130--Hb_011794_040 Hb_001481_120 Hb_001481_120 Hb_012753_130--Hb_001481_120 Hb_000032_620 Hb_000032_620 Hb_012753_130--Hb_000032_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.210994 0.0913342 0.0394004 0.193836 0.0995856 0.222752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113828 0.134275 0.0818509 0.0902134 0

CAGE analysis