Hb_000261_290

Information

Type -
Description -
Location Contig261: 254377-262870
Sequence    

Annotation

kegg
ID ola:100049188
description eef1a, eif1a; elongation factor 1 alpha
nr
ID ADR70875.1
description eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
swissprot
ID Q9YIC0
description Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1
trembl
ID V5IV18
description Elongation factor 1-alpha OS=Hevea brasiliensis GN=EF1A2 PE=2 SV=1
Gene Ontology
ID GO:0003746
description elongation factor 1-alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27278: 253982-256474 , PASA_asmbl_27279: 206363-256628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_290 0.0 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
2 Hb_000098_130 0.0443406875 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
3 Hb_004899_070 0.0504374519 - - PREDICTED: RRP12-like protein [Jatropha curcas]
4 Hb_000120_620 0.059947584 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
5 Hb_000313_340 0.0664284122 - - DNA repair protein xp-E, putative [Ricinus communis]
6 Hb_003097_180 0.0684034194 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
7 Hb_006588_050 0.069698069 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
8 Hb_004970_160 0.0746876802 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
9 Hb_001946_300 0.0809062143 - - PREDICTED: F-box protein At-B [Jatropha curcas]
10 Hb_005462_020 0.0852820462 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
11 Hb_140049_020 0.0856718696 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
12 Hb_001731_020 0.0857403431 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
13 Hb_000158_130 0.0864512995 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
14 Hb_000363_130 0.0883235412 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
15 Hb_004017_040 0.0884365949 - - kinetochore protein nuf2, putative [Ricinus communis]
16 Hb_000640_200 0.0898620222 - - hypothetical protein RCOM_1346600 [Ricinus communis]
17 Hb_003124_130 0.0910658752 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
18 Hb_000331_160 0.0928080248 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
19 Hb_001489_070 0.0928469262 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
20 Hb_078477_040 0.092850878 - - nuclear movement protein nudc, putative [Ricinus communis]

Gene co-expression network

sample Hb_000261_290 Hb_000261_290 Hb_000098_130 Hb_000098_130 Hb_000261_290--Hb_000098_130 Hb_004899_070 Hb_004899_070 Hb_000261_290--Hb_004899_070 Hb_000120_620 Hb_000120_620 Hb_000261_290--Hb_000120_620 Hb_000313_340 Hb_000313_340 Hb_000261_290--Hb_000313_340 Hb_003097_180 Hb_003097_180 Hb_000261_290--Hb_003097_180 Hb_006588_050 Hb_006588_050 Hb_000261_290--Hb_006588_050 Hb_000098_130--Hb_004899_070 Hb_000098_130--Hb_000120_620 Hb_000098_130--Hb_003097_180 Hb_000363_130 Hb_000363_130 Hb_000098_130--Hb_000363_130 Hb_000300_360 Hb_000300_360 Hb_000098_130--Hb_000300_360 Hb_004899_070--Hb_000120_620 Hb_004970_160 Hb_004970_160 Hb_004899_070--Hb_004970_160 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_000813_100 Hb_000813_100 Hb_004899_070--Hb_000813_100 Hb_000120_620--Hb_004970_160 Hb_000120_620--Hb_003097_180 Hb_001178_150 Hb_001178_150 Hb_000120_620--Hb_001178_150 Hb_140049_020 Hb_140049_020 Hb_000313_340--Hb_140049_020 Hb_001946_300 Hb_001946_300 Hb_000313_340--Hb_001946_300 Hb_007885_070 Hb_007885_070 Hb_000313_340--Hb_007885_070 Hb_000313_340--Hb_004899_070 Hb_000313_340--Hb_000363_130 Hb_003097_180--Hb_004899_070 Hb_003097_180--Hb_006588_050 Hb_003097_180--Hb_001178_150 Hb_006588_050--Hb_004899_070 Hb_003866_020 Hb_003866_020 Hb_006588_050--Hb_003866_020 Hb_006816_300 Hb_006816_300 Hb_006588_050--Hb_006816_300 Hb_006588_050--Hb_000120_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
611.19 528.693 234.528 225.239 643.104 698.359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
164.495 120.8 133.28 299.105 115.668

CAGE analysis