Hb_000261_320

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig261: 276883-279657
Sequence    

Annotation

kegg
ID rcu:RCOM_1019160
description leucine-rich repeat-containing protein, putative (EC:3.1.3.16)
nr
ID XP_002518080.1
description leucine-rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID B9RWG1
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1019160 PE=4 SV=1
Gene Ontology
ID GO:0004721
description cc-nbs-lrr resistance isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27288: 276294-277081 , PASA_asmbl_27290: 277662-277804 , PASA_asmbl_27291: 277980-279259 , PASA_asmbl_27292: 279574-279782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_320 0.0 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
2 Hb_002003_040 0.1127846901 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
3 Hb_002833_020 0.1170181163 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
4 Hb_005880_010 0.1252880932 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
5 Hb_001391_100 0.1288746801 - - AMP dependent ligase, putative [Ricinus communis]
6 Hb_073973_020 0.1380461533 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
7 Hb_001268_300 0.1381515196 - - conserved hypothetical protein [Ricinus communis]
8 Hb_061908_020 0.1405655869 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_032717_010 0.1407751942 - - unnamed protein product [Vitis vinifera]
10 Hb_062229_010 0.1410930116 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
11 Hb_083242_020 0.1457400137 - - hypothetical protein JCGZ_20097 [Jatropha curcas]
12 Hb_001496_120 0.148577715 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
13 Hb_082683_010 0.1487617383 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
14 Hb_004605_020 0.1504480328 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
15 Hb_000417_280 0.1522776501 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001008_110 0.1524519764 - - -
17 Hb_001307_200 0.1547578636 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
18 Hb_003517_100 0.1552728915 transcription factor TF Family: GRAS -
19 Hb_000417_410 0.1556486133 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
20 Hb_004864_020 0.1570465717 - - Polyprotein, putative [Solanum demissum]

Gene co-expression network

sample Hb_000261_320 Hb_000261_320 Hb_002003_040 Hb_002003_040 Hb_000261_320--Hb_002003_040 Hb_002833_020 Hb_002833_020 Hb_000261_320--Hb_002833_020 Hb_005880_010 Hb_005880_010 Hb_000261_320--Hb_005880_010 Hb_001391_100 Hb_001391_100 Hb_000261_320--Hb_001391_100 Hb_073973_020 Hb_073973_020 Hb_000261_320--Hb_073973_020 Hb_001268_300 Hb_001268_300 Hb_000261_320--Hb_001268_300 Hb_002420_010 Hb_002420_010 Hb_002003_040--Hb_002420_010 Hb_002671_060 Hb_002671_060 Hb_002003_040--Hb_002671_060 Hb_002003_040--Hb_002833_020 Hb_082683_010 Hb_082683_010 Hb_002003_040--Hb_082683_010 Hb_001008_110 Hb_001008_110 Hb_002003_040--Hb_001008_110 Hb_002833_020--Hb_001008_110 Hb_000417_280 Hb_000417_280 Hb_002833_020--Hb_000417_280 Hb_000100_210 Hb_000100_210 Hb_002833_020--Hb_000100_210 Hb_000085_380 Hb_000085_380 Hb_002833_020--Hb_000085_380 Hb_000120_310 Hb_000120_310 Hb_002833_020--Hb_000120_310 Hb_042202_020 Hb_042202_020 Hb_002833_020--Hb_042202_020 Hb_008175_030 Hb_008175_030 Hb_005880_010--Hb_008175_030 Hb_005880_010--Hb_002833_020 Hb_002660_040 Hb_002660_040 Hb_005880_010--Hb_002660_040 Hb_000778_020 Hb_000778_020 Hb_005880_010--Hb_000778_020 Hb_001369_160 Hb_001369_160 Hb_005880_010--Hb_001369_160 Hb_062229_010 Hb_062229_010 Hb_001391_100--Hb_062229_010 Hb_061908_020 Hb_061908_020 Hb_001391_100--Hb_061908_020 Hb_000197_230 Hb_000197_230 Hb_001391_100--Hb_000197_230 Hb_001391_100--Hb_002003_040 Hb_004605_020 Hb_004605_020 Hb_001391_100--Hb_004605_020 Hb_001307_200 Hb_001307_200 Hb_073973_020--Hb_001307_200 Hb_000221_180 Hb_000221_180 Hb_073973_020--Hb_000221_180 Hb_000417_410 Hb_000417_410 Hb_073973_020--Hb_000417_410 Hb_073973_020--Hb_001268_300 Hb_002888_040 Hb_002888_040 Hb_073973_020--Hb_002888_040 Hb_001496_120 Hb_001496_120 Hb_073973_020--Hb_001496_120 Hb_003517_100 Hb_003517_100 Hb_001268_300--Hb_003517_100 Hb_001268_300--Hb_000417_280 Hb_001268_300--Hb_042202_020 Hb_009193_060 Hb_009193_060 Hb_001268_300--Hb_009193_060 Hb_001268_300--Hb_082683_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.685055 5.27516 2.26248 2.27114 0.0729888 0.735812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.220971 0.0745217 0.0474523 4.80046 4.04835

CAGE analysis