Hb_000261_350

Information

Type -
Description -
Location Contig261: 303279-310289
Sequence    

Annotation

kegg
ID rcu:RCOM_1019320
description hypothetical protein
nr
ID XP_012071132.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
swissprot
ID Q8W4N3
description Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana GN=UBP2 PE=1 SV=2
trembl
ID A0A067L5H9
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_01121 PE=3 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin carboxyl-terminal hydrolase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27296: 303416-307068 , PASA_asmbl_27298: 307336-307831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_350 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
2 Hb_001675_180 0.076967565 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
3 Hb_010417_050 0.0813458085 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
4 Hb_172632_080 0.0875813361 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
5 Hb_002493_020 0.0881529843 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
6 Hb_002811_060 0.0883362656 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
7 Hb_005054_100 0.0898904068 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
8 Hb_002716_130 0.0914063704 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
9 Hb_008695_180 0.0923992325 - - eukaryotic translation initiation factor [Hevea brasiliensis]
10 Hb_000796_040 0.0931387688 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000072_220 0.093541903 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
12 Hb_003195_070 0.0942559155 - - Uncharacterized protein isoform 1 [Theobroma cacao]
13 Hb_005489_110 0.0948416618 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
14 Hb_000101_240 0.097818868 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
15 Hb_000034_040 0.0979651849 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
16 Hb_004228_010 0.0985372546 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
17 Hb_007545_030 0.0987121283 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011139_030 0.0987281949 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
19 Hb_000739_310 0.0997943265 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
20 Hb_000025_110 0.1003081768 - - hypothetical protein JCGZ_22722 [Jatropha curcas]

Gene co-expression network

sample Hb_000261_350 Hb_000261_350 Hb_001675_180 Hb_001675_180 Hb_000261_350--Hb_001675_180 Hb_010417_050 Hb_010417_050 Hb_000261_350--Hb_010417_050 Hb_172632_080 Hb_172632_080 Hb_000261_350--Hb_172632_080 Hb_002493_020 Hb_002493_020 Hb_000261_350--Hb_002493_020 Hb_002811_060 Hb_002811_060 Hb_000261_350--Hb_002811_060 Hb_005054_100 Hb_005054_100 Hb_000261_350--Hb_005054_100 Hb_044728_010 Hb_044728_010 Hb_001675_180--Hb_044728_010 Hb_000072_220 Hb_000072_220 Hb_001675_180--Hb_000072_220 Hb_000010_330 Hb_000010_330 Hb_001675_180--Hb_000010_330 Hb_001776_140 Hb_001776_140 Hb_001675_180--Hb_001776_140 Hb_008643_210 Hb_008643_210 Hb_001675_180--Hb_008643_210 Hb_000165_250 Hb_000165_250 Hb_001675_180--Hb_000165_250 Hb_003988_010 Hb_003988_010 Hb_010417_050--Hb_003988_010 Hb_014267_010 Hb_014267_010 Hb_010417_050--Hb_014267_010 Hb_004228_010 Hb_004228_010 Hb_010417_050--Hb_004228_010 Hb_001199_100 Hb_001199_100 Hb_010417_050--Hb_001199_100 Hb_000101_240 Hb_000101_240 Hb_010417_050--Hb_000101_240 Hb_001700_040 Hb_001700_040 Hb_010417_050--Hb_001700_040 Hb_009218_010 Hb_009218_010 Hb_172632_080--Hb_009218_010 Hb_172632_080--Hb_000072_220 Hb_172632_080--Hb_001199_100 Hb_009548_020 Hb_009548_020 Hb_172632_080--Hb_009548_020 Hb_000457_260 Hb_000457_260 Hb_172632_080--Hb_000457_260 Hb_188063_020 Hb_188063_020 Hb_172632_080--Hb_188063_020 Hb_001496_070 Hb_001496_070 Hb_002493_020--Hb_001496_070 Hb_005679_050 Hb_005679_050 Hb_002493_020--Hb_005679_050 Hb_004102_140 Hb_004102_140 Hb_002493_020--Hb_004102_140 Hb_002493_020--Hb_004228_010 Hb_002493_020--Hb_172632_080 Hb_004306_080 Hb_004306_080 Hb_002493_020--Hb_004306_080 Hb_012022_090 Hb_012022_090 Hb_002811_060--Hb_012022_090 Hb_002811_060--Hb_005054_100 Hb_000116_500 Hb_000116_500 Hb_002811_060--Hb_000116_500 Hb_002811_060--Hb_003988_010 Hb_000608_320 Hb_000608_320 Hb_002811_060--Hb_000608_320 Hb_006660_010 Hb_006660_010 Hb_002811_060--Hb_006660_010 Hb_002740_180 Hb_002740_180 Hb_005054_100--Hb_002740_180 Hb_005054_100--Hb_012022_090 Hb_000169_090 Hb_000169_090 Hb_005054_100--Hb_000169_090 Hb_005490_030 Hb_005490_030 Hb_005054_100--Hb_005490_030 Hb_023001_060 Hb_023001_060 Hb_005054_100--Hb_023001_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.27436 3.12057 1.52494 4.39339 7.1917 8.99904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.2491 4.38463 6.52796 3.48761 5.21085

CAGE analysis