Hb_000261_360

Information

Type -
Description -
Location Contig261: 312028-312834
Sequence    

Annotation

kegg
ID pvu:PHAVU_008G127600g
description hypothetical protein
nr
ID AFK43586.1
description unknown [Lotus japonicus]
swissprot
ID -
description -
trembl
ID M0TAT9
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27300: 312193-313181
cDNA
(Sanger)
(ID:Location)		 007_P17.ab1: 312271-313073 , 009_G09.ab1: 312269-313006 , 016_N06.ab1: 312279-313083 , 018_L15.ab1: 312279-313083 , 020_L01.ab1: 312269-313083 , 030_B18.ab1: 312249-312940 , 038_O11.ab1: 312193-313035 , 044_E06.ab1: 312269-313073 , 048_H18.ab1: 312272-313081 , 049_O18.ab1: 312279-313016

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_360 0.0 - - unknown [Lotus japonicus]
2 Hb_000265_130 0.1213603898 - - -
3 Hb_010504_030 0.1332186043 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
4 Hb_000176_120 0.137405561 - - seryl-tRNA synthetase, putative [Ricinus communis]
5 Hb_000001_040 0.1436358685 - - unnamed protein product [Coffea canephora]
6 Hb_166480_010 0.1596759652 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
7 Hb_008277_030 0.1660677487 - - hypothetical protein CICLE_v10024419mg, partial [Citrus clementina]
8 Hb_005542_090 0.1762918004 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
9 Hb_006995_010 0.1806688529 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
10 Hb_003581_010 0.1830173272 - - hypothetical protein VITISV_004687 [Vitis vinifera]
11 Hb_012305_040 0.1838142267 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
12 Hb_000204_020 0.1843329376 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
13 Hb_056199_010 0.1847620038 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
14 Hb_005054_070 0.1848398323 - - unnamed protein product [Vitis vinifera]
15 Hb_007188_020 0.1877120691 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
16 Hb_005367_010 0.1896276873 - - -
17 Hb_006487_060 0.1928052944 - - Defective in cullin neddylation protein, putative [Ricinus communis]
18 Hb_128998_010 0.1938105165 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
19 Hb_116596_010 0.1953799343 - - PREDICTED: probable receptor-like protein kinase At5g47070-like isoform X1 [Citrus sinensis]
20 Hb_116632_010 0.1961644443 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000261_360 Hb_000261_360 Hb_000265_130 Hb_000265_130 Hb_000261_360--Hb_000265_130 Hb_010504_030 Hb_010504_030 Hb_000261_360--Hb_010504_030 Hb_000176_120 Hb_000176_120 Hb_000261_360--Hb_000176_120 Hb_000001_040 Hb_000001_040 Hb_000261_360--Hb_000001_040 Hb_166480_010 Hb_166480_010 Hb_000261_360--Hb_166480_010 Hb_008277_030 Hb_008277_030 Hb_000261_360--Hb_008277_030 Hb_000265_130--Hb_000001_040 Hb_000265_130--Hb_010504_030 Hb_003581_010 Hb_003581_010 Hb_000265_130--Hb_003581_010 Hb_000265_130--Hb_000176_120 Hb_007188_020 Hb_007188_020 Hb_000265_130--Hb_007188_020 Hb_128998_010 Hb_128998_010 Hb_010504_030--Hb_128998_010 Hb_010504_030--Hb_000176_120 Hb_000327_290 Hb_000327_290 Hb_010504_030--Hb_000327_290 Hb_010504_030--Hb_000001_040 Hb_000007_460 Hb_000007_460 Hb_010504_030--Hb_000007_460 Hb_005054_070 Hb_005054_070 Hb_000176_120--Hb_005054_070 Hb_006487_060 Hb_006487_060 Hb_000176_120--Hb_006487_060 Hb_152554_010 Hb_152554_010 Hb_000176_120--Hb_152554_010 Hb_000176_120--Hb_000001_040 Hb_136731_010 Hb_136731_010 Hb_000176_120--Hb_136731_010 Hb_106005_010 Hb_106005_010 Hb_000001_040--Hb_106005_010 Hb_000001_040--Hb_007188_020 Hb_004117_180 Hb_004117_180 Hb_000001_040--Hb_004117_180 Hb_000001_040--Hb_003581_010 Hb_002482_060 Hb_002482_060 Hb_166480_010--Hb_002482_060 Hb_001396_250 Hb_001396_250 Hb_166480_010--Hb_001396_250 Hb_000120_190 Hb_000120_190 Hb_166480_010--Hb_000120_190 Hb_000015_070 Hb_000015_070 Hb_166480_010--Hb_000015_070 Hb_007763_050 Hb_007763_050 Hb_166480_010--Hb_007763_050 Hb_005085_030 Hb_005085_030 Hb_166480_010--Hb_005085_030 Hb_008277_030--Hb_000265_130 Hb_073559_010 Hb_073559_010 Hb_008277_030--Hb_073559_010 Hb_000204_020 Hb_000204_020 Hb_008277_030--Hb_000204_020 Hb_032531_060 Hb_032531_060 Hb_008277_030--Hb_032531_060 Hb_000248_030 Hb_000248_030 Hb_008277_030--Hb_000248_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39624 0.161934 0.160027 4.01001 1.54028 9.23533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.02365 2.23339 0.446311 0.742513 0

CAGE analysis