Hb_000261_390

Information

Type transcription factor
Description TF Family: ARID
Location Contig261: 324639-327968
Sequence    

Annotation

kegg
ID rcu:RCOM_1019520
description transcription factor, putative
nr
ID XP_012071138.1
description PREDICTED: high mobility group B protein 15 [Jatropha curcas]
swissprot
ID Q9MAT6
description High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15 PE=2 SV=1
trembl
ID A0A067KTA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01124 PE=4 SV=1
Gene Ontology
ID GO:0005634
description high mobility group b protein 15 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27305: 325160-325570 , PASA_asmbl_27306: 326217-326468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_390 0.0 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
2 Hb_001135_170 0.0758806924 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
3 Hb_001832_180 0.0845168388 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
4 Hb_011344_030 0.0905707356 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
5 Hb_023344_040 0.0929625916 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004631_020 0.095892584 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
7 Hb_001287_070 0.0959556656 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
8 Hb_000010_380 0.0980148996 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
9 Hb_000992_090 0.0988324142 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
10 Hb_032631_060 0.0989712843 - - Myosin heavy chain, putative [Ricinus communis]
11 Hb_003090_050 0.09939039 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
12 Hb_007044_020 0.1018876627 - - unnamed protein product [Vitis vinifera]
13 Hb_000111_460 0.1034676155 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
14 Hb_000923_030 0.1039143842 - - F-box family protein [Populus trichocarpa]
15 Hb_000805_080 0.1048978373 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
16 Hb_000841_040 0.1064202173 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
17 Hb_003053_080 0.1066741107 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000039_210 0.1071663511 - - PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
19 Hb_011068_010 0.1080966652 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
20 Hb_000029_390 0.1084500896 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000261_390 Hb_000261_390 Hb_001135_170 Hb_001135_170 Hb_000261_390--Hb_001135_170 Hb_001832_180 Hb_001832_180 Hb_000261_390--Hb_001832_180 Hb_011344_030 Hb_011344_030 Hb_000261_390--Hb_011344_030 Hb_023344_040 Hb_023344_040 Hb_000261_390--Hb_023344_040 Hb_004631_020 Hb_004631_020 Hb_000261_390--Hb_004631_020 Hb_001287_070 Hb_001287_070 Hb_000261_390--Hb_001287_070 Hb_001135_170--Hb_004631_020 Hb_000992_090 Hb_000992_090 Hb_001135_170--Hb_000992_090 Hb_001135_170--Hb_011344_030 Hb_001135_170--Hb_001832_180 Hb_001135_170--Hb_023344_040 Hb_000841_040 Hb_000841_040 Hb_001832_180--Hb_000841_040 Hb_003090_050 Hb_003090_050 Hb_001832_180--Hb_003090_050 Hb_000010_380 Hb_000010_380 Hb_001832_180--Hb_000010_380 Hb_001832_180--Hb_001287_070 Hb_000282_100 Hb_000282_100 Hb_001832_180--Hb_000282_100 Hb_000009_470 Hb_000009_470 Hb_011344_030--Hb_000009_470 Hb_011344_030--Hb_023344_040 Hb_000111_460 Hb_000111_460 Hb_011344_030--Hb_000111_460 Hb_007044_020 Hb_007044_020 Hb_011344_030--Hb_007044_020 Hb_011344_030--Hb_000992_090 Hb_023344_040--Hb_000992_090 Hb_023344_040--Hb_000111_460 Hb_023344_040--Hb_000009_470 Hb_014361_120 Hb_014361_120 Hb_023344_040--Hb_014361_120 Hb_004712_230 Hb_004712_230 Hb_004631_020--Hb_004712_230 Hb_004631_020--Hb_000841_040 Hb_004631_020--Hb_003090_050 Hb_005736_030 Hb_005736_030 Hb_004631_020--Hb_005736_030 Hb_032631_060 Hb_032631_060 Hb_004631_020--Hb_032631_060 Hb_011068_010 Hb_011068_010 Hb_001287_070--Hb_011068_010 Hb_001046_060 Hb_001046_060 Hb_001287_070--Hb_001046_060 Hb_005000_120 Hb_005000_120 Hb_001287_070--Hb_005000_120 Hb_001287_070--Hb_003090_050 Hb_000805_080 Hb_000805_080 Hb_001287_070--Hb_000805_080 Hb_001287_070--Hb_000010_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.475405 0.517125 7.29763 1.89261 0 0.0545667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0270373 0.0850891 0 0.0423874 25.7146

CAGE analysis