Hb_000261_440

Information

Type transcription factor
Description TF Family: G2-like
Location Contig261: 429746-436507
Sequence    

Annotation

kegg
ID rcu:RCOM_1019810
description transcription factor, putative
nr
ID XP_002518104.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9SAK5
description Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2
trembl
ID B9RWI5
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1019810 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27314: 429796-436308 , PASA_asmbl_27315: 429879-436277
cDNA
(Sanger)
(ID:Location)		 017_P22.ab1: 431265-436256 , 020_E13.ab1: 430349-436256 , 021_L11.ab1: 430361-436308 , 034_O24.ab1: 430289-436256 , 042_M05.ab1: 430361-436256

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_440 0.0 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
2 Hb_000086_060 0.1169809044 - - PREDICTED: TOM1-like protein 2 isoform X2 [Populus euphratica]
3 Hb_000005_330 0.1216218229 transcription factor TF Family: ARF PREDICTED: auxin response factor 6 isoform X2 [Jatropha curcas]
4 Hb_007666_020 0.1264037364 - - alkaline phytoceramidase, putative [Ricinus communis]
5 Hb_022092_120 0.1310602683 - - PREDICTED: uncharacterized protein LOC105646971 [Jatropha curcas]
6 Hb_021254_030 0.1333289622 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
7 Hb_003151_050 0.1359372188 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
8 Hb_002235_400 0.1372548965 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
9 Hb_001195_690 0.1376591016 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
10 Hb_002411_200 0.1384017402 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000221_210 0.138846914 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
12 Hb_002540_030 0.1408125285 - - hypothetical protein 32 [Hevea brasiliensis]
13 Hb_003185_020 0.1413544364 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
14 Hb_001386_120 0.1429221634 - - PREDICTED: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
15 Hb_061802_020 0.1457799821 - - zinc finger family protein [Populus trichocarpa]
16 Hb_000212_350 0.1467362223 - - glucosamine-fructose-6-phosphate aminotransferase, putative [Ricinus communis]
17 Hb_000922_270 0.1486661779 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
18 Hb_002529_100 0.1487056654 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
19 Hb_001671_080 0.1489260303 - - amino acid binding protein, putative [Ricinus communis]
20 Hb_014720_080 0.1490818668 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000261_440 Hb_000261_440 Hb_000086_060 Hb_000086_060 Hb_000261_440--Hb_000086_060 Hb_000005_330 Hb_000005_330 Hb_000261_440--Hb_000005_330 Hb_007666_020 Hb_007666_020 Hb_000261_440--Hb_007666_020 Hb_022092_120 Hb_022092_120 Hb_000261_440--Hb_022092_120 Hb_021254_030 Hb_021254_030 Hb_000261_440--Hb_021254_030 Hb_003151_050 Hb_003151_050 Hb_000261_440--Hb_003151_050 Hb_000221_210 Hb_000221_210 Hb_000086_060--Hb_000221_210 Hb_005941_040 Hb_005941_040 Hb_000086_060--Hb_005941_040 Hb_000987_120 Hb_000987_120 Hb_000086_060--Hb_000987_120 Hb_005653_060 Hb_005653_060 Hb_000086_060--Hb_005653_060 Hb_000212_350 Hb_000212_350 Hb_000086_060--Hb_000212_350 Hb_000005_330--Hb_022092_120 Hb_000049_120 Hb_000049_120 Hb_000005_330--Hb_000049_120 Hb_005215_030 Hb_005215_030 Hb_000005_330--Hb_005215_030 Hb_000589_270 Hb_000589_270 Hb_000005_330--Hb_000589_270 Hb_020178_070 Hb_020178_070 Hb_000005_330--Hb_020178_070 Hb_000922_270 Hb_000922_270 Hb_007666_020--Hb_000922_270 Hb_005618_040 Hb_005618_040 Hb_007666_020--Hb_005618_040 Hb_002540_030 Hb_002540_030 Hb_007666_020--Hb_002540_030 Hb_002527_070 Hb_002527_070 Hb_007666_020--Hb_002527_070 Hb_001711_030 Hb_001711_030 Hb_007666_020--Hb_001711_030 Hb_002411_200 Hb_002411_200 Hb_007666_020--Hb_002411_200 Hb_022092_120--Hb_000221_210 Hb_000395_080 Hb_000395_080 Hb_022092_120--Hb_000395_080 Hb_005396_050 Hb_005396_050 Hb_022092_120--Hb_005396_050 Hb_000237_080 Hb_000237_080 Hb_022092_120--Hb_000237_080 Hb_002137_020 Hb_002137_020 Hb_022092_120--Hb_002137_020 Hb_004109_200 Hb_004109_200 Hb_021254_030--Hb_004109_200 Hb_001195_690 Hb_001195_690 Hb_021254_030--Hb_001195_690 Hb_010381_070 Hb_010381_070 Hb_021254_030--Hb_010381_070 Hb_000139_410 Hb_000139_410 Hb_021254_030--Hb_000139_410 Hb_009615_150 Hb_009615_150 Hb_021254_030--Hb_009615_150 Hb_003994_180 Hb_003994_180 Hb_021254_030--Hb_003994_180 Hb_000091_090 Hb_000091_090 Hb_003151_050--Hb_000091_090 Hb_023386_080 Hb_023386_080 Hb_003151_050--Hb_023386_080 Hb_021650_030 Hb_021650_030 Hb_003151_050--Hb_021650_030 Hb_004108_050 Hb_004108_050 Hb_003151_050--Hb_004108_050 Hb_000429_170 Hb_000429_170 Hb_003151_050--Hb_000429_170 Hb_000665_040 Hb_000665_040 Hb_003151_050--Hb_000665_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
192.939 116.448 51.8585 26.9511 106.427 112.032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
373.583 146.819 206.37 59.0107 14.747

CAGE analysis