Hb_000261_510

Information

Type -
Description -
Location Contig261: 511426-513200
Sequence    

Annotation

kegg
ID rcu:RCOM_1020210
description hypothetical protein
nr
ID XP_011034711.1
description PREDICTED: CLAVATA3/ESR (CLE)-related protein TDIF-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9RWJ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1020210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_510 0.0 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein TDIF-like [Populus euphratica]
2 Hb_000699_110 0.1189498808 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
3 Hb_004724_140 0.1237214402 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
4 Hb_003226_150 0.1256855645 - - PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]
5 Hb_025246_010 0.1288407719 - - -
6 Hb_002681_020 0.1293140465 - - aldose 1-epimerase, putative [Ricinus communis]
7 Hb_000984_190 0.1354971395 - - -
8 Hb_003777_180 0.1377462408 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
9 Hb_002759_250 0.140071457 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
10 Hb_006569_020 0.1455063625 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
11 Hb_001437_040 0.1457415065 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
12 Hb_001623_240 0.1487142542 - - hypothetical protein VITISV_004933 [Vitis vinifera]
13 Hb_000316_110 0.1499125691 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
14 Hb_002518_250 0.1519346956 - - conserved hypothetical protein 10 [Hevea brasiliensis]
15 Hb_000300_610 0.1542282394 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
16 Hb_002235_400 0.1554275877 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
17 Hb_001999_120 0.1555323962 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
18 Hb_002226_030 0.1558293365 - - PREDICTED: high affinity nitrate transporter 2.7 [Jatropha curcas]
19 Hb_004607_140 0.1565883713 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
20 Hb_000705_260 0.1566761946 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000261_510 Hb_000261_510 Hb_000699_110 Hb_000699_110 Hb_000261_510--Hb_000699_110 Hb_004724_140 Hb_004724_140 Hb_000261_510--Hb_004724_140 Hb_003226_150 Hb_003226_150 Hb_000261_510--Hb_003226_150 Hb_025246_010 Hb_025246_010 Hb_000261_510--Hb_025246_010 Hb_002681_020 Hb_002681_020 Hb_000261_510--Hb_002681_020 Hb_000984_190 Hb_000984_190 Hb_000261_510--Hb_000984_190 Hb_000699_110--Hb_025246_010 Hb_001623_240 Hb_001623_240 Hb_000699_110--Hb_001623_240 Hb_000175_040 Hb_000175_040 Hb_000699_110--Hb_000175_040 Hb_003057_050 Hb_003057_050 Hb_000699_110--Hb_003057_050 Hb_000699_110--Hb_004724_140 Hb_004724_140--Hb_001623_240 Hb_003777_180 Hb_003777_180 Hb_004724_140--Hb_003777_180 Hb_002529_100 Hb_002529_100 Hb_004724_140--Hb_002529_100 Hb_004116_080 Hb_004116_080 Hb_004724_140--Hb_004116_080 Hb_011931_050 Hb_011931_050 Hb_004724_140--Hb_011931_050 Hb_001341_130 Hb_001341_130 Hb_004724_140--Hb_001341_130 Hb_000521_150 Hb_000521_150 Hb_003226_150--Hb_000521_150 Hb_000282_060 Hb_000282_060 Hb_003226_150--Hb_000282_060 Hb_000926_290 Hb_000926_290 Hb_003226_150--Hb_000926_290 Hb_006569_020 Hb_006569_020 Hb_003226_150--Hb_006569_020 Hb_003226_150--Hb_002529_100 Hb_008695_190 Hb_008695_190 Hb_003226_150--Hb_008695_190 Hb_003057_130 Hb_003057_130 Hb_025246_010--Hb_003057_130 Hb_025246_010--Hb_003057_050 Hb_036369_010 Hb_036369_010 Hb_025246_010--Hb_036369_010 Hb_001248_020 Hb_001248_020 Hb_025246_010--Hb_001248_020 Hb_025246_010--Hb_000984_190 Hb_001776_110 Hb_001776_110 Hb_002681_020--Hb_001776_110 Hb_003052_100 Hb_003052_100 Hb_002681_020--Hb_003052_100 Hb_004812_010 Hb_004812_010 Hb_002681_020--Hb_004812_010 Hb_000665_040 Hb_000665_040 Hb_002681_020--Hb_000665_040 Hb_004310_030 Hb_004310_030 Hb_002681_020--Hb_004310_030 Hb_008554_020 Hb_008554_020 Hb_002681_020--Hb_008554_020 Hb_001235_070 Hb_001235_070 Hb_000984_190--Hb_001235_070 Hb_005941_010 Hb_005941_010 Hb_000984_190--Hb_005941_010 Hb_003453_010 Hb_003453_010 Hb_000984_190--Hb_003453_010 Hb_001437_040 Hb_001437_040 Hb_000984_190--Hb_001437_040 Hb_017895_050 Hb_017895_050 Hb_000984_190--Hb_017895_050 Hb_003086_020 Hb_003086_020 Hb_000984_190--Hb_003086_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.78047 0.295003 0.146462 0.307463 1.6014 2.19088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.44976 2.5633 1.36389 0.779724 0.859092

CAGE analysis