Hb_000264_020

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig264: 6850-7770
Sequence    

Annotation

kegg
ID rcu:RCOM_0935180
description zinc finger protein, putative
nr
ID XP_002519023.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q84TE9
description Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1
trembl
ID B9RZ54
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0935180 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27581: 6543-8221
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_020 0.0 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
2 Hb_000373_180 0.0766855692 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
3 Hb_146225_010 0.0854739102 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
4 Hb_000260_310 0.0991943041 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
5 Hb_005841_050 0.1072552437 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
6 Hb_001846_070 0.1081581609 - - PREDICTED: fructokinase-1 [Jatropha curcas]
7 Hb_002759_240 0.1116404157 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
8 Hb_019654_090 0.1116962025 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
9 Hb_003185_050 0.1117224301 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
10 Hb_001157_010 0.1130711968 - - deoxyhypusine synthase, putative [Ricinus communis]
11 Hb_002298_050 0.1133019801 - - serine/threonine-protein kinase, putative [Ricinus communis]
12 Hb_003326_020 0.1146171085 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
13 Hb_002182_030 0.1146656261 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
14 Hb_003579_030 0.1214388545 - - phosphatase 2C family protein [Populus trichocarpa]
15 Hb_007645_080 0.1218604615 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
16 Hb_001638_020 0.1221007019 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_001052_030 0.1234496303 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
18 Hb_003929_120 0.1241451443 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
19 Hb_001894_170 0.1253316997 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
20 Hb_003581_220 0.1297082654 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000264_020 Hb_000264_020 Hb_000373_180 Hb_000373_180 Hb_000264_020--Hb_000373_180 Hb_146225_010 Hb_146225_010 Hb_000264_020--Hb_146225_010 Hb_000260_310 Hb_000260_310 Hb_000264_020--Hb_000260_310 Hb_005841_050 Hb_005841_050 Hb_000264_020--Hb_005841_050 Hb_001846_070 Hb_001846_070 Hb_000264_020--Hb_001846_070 Hb_002759_240 Hb_002759_240 Hb_000264_020--Hb_002759_240 Hb_002298_050 Hb_002298_050 Hb_000373_180--Hb_002298_050 Hb_000373_180--Hb_146225_010 Hb_001894_170 Hb_001894_170 Hb_000373_180--Hb_001894_170 Hb_012053_050 Hb_012053_050 Hb_000373_180--Hb_012053_050 Hb_003326_020 Hb_003326_020 Hb_000373_180--Hb_003326_020 Hb_001052_030 Hb_001052_030 Hb_146225_010--Hb_001052_030 Hb_146225_010--Hb_005841_050 Hb_146225_010--Hb_003326_020 Hb_000123_160 Hb_000123_160 Hb_146225_010--Hb_000123_160 Hb_000239_030 Hb_000239_030 Hb_146225_010--Hb_000239_030 Hb_003504_020 Hb_003504_020 Hb_000260_310--Hb_003504_020 Hb_019654_090 Hb_019654_090 Hb_000260_310--Hb_019654_090 Hb_002053_060 Hb_002053_060 Hb_000260_310--Hb_002053_060 Hb_000260_310--Hb_000373_180 Hb_001514_230 Hb_001514_230 Hb_000260_310--Hb_001514_230 Hb_002217_450 Hb_002217_450 Hb_005841_050--Hb_002217_450 Hb_001638_020 Hb_001638_020 Hb_005841_050--Hb_001638_020 Hb_001141_030 Hb_001141_030 Hb_005841_050--Hb_001141_030 Hb_017862_010 Hb_017862_010 Hb_005841_050--Hb_017862_010 Hb_021409_090 Hb_021409_090 Hb_005841_050--Hb_021409_090 Hb_003581_220 Hb_003581_220 Hb_001846_070--Hb_003581_220 Hb_000530_070 Hb_000530_070 Hb_001846_070--Hb_000530_070 Hb_001846_070--Hb_002759_240 Hb_001846_070--Hb_146225_010 Hb_002182_030 Hb_002182_030 Hb_001846_070--Hb_002182_030 Hb_002759_240--Hb_001894_170 Hb_002759_240--Hb_146225_010 Hb_005841_040 Hb_005841_040 Hb_002759_240--Hb_005841_040 Hb_002759_240--Hb_001052_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.5533 17.8593 6.03369 20.6448 14.6224 23.0434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.7098 132.563 117.943 19.4704 14.4678

CAGE analysis