Hb_000264_060

Information

Type -
Description -
Location Contig264: 31798-33669
Sequence    

Annotation

kegg
ID rcu:RCOM_0935630
description RNA polymerase-associated protein RTF1, putative
nr
ID XP_012091565.1
description PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
swissprot
ID Q9C950
description Protein RTF1 homolog OS=Arabidopsis thaliana GN=VIP5 PE=1 SV=1
trembl
ID A0A067JDU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21409 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna polymerase-associated protein rtf1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27586: 34402-34694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_060 0.0 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
2 Hb_001348_140 0.0951098404 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010298_020 0.0962412325 - - PREDICTED: uncharacterized protein At2g02148 isoform X4 [Vitis vinifera]
4 Hb_000322_170 0.0963320541 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
5 Hb_074683_020 0.1093204219 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
6 Hb_000093_130 0.1106305237 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
7 Hb_009615_110 0.1107537423 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
8 Hb_001227_110 0.1142621931 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
9 Hb_001016_060 0.1152617044 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006173_020 0.1158645796 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
11 Hb_005217_020 0.1161865311 - - PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]
12 Hb_000363_340 0.1174164785 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
13 Hb_007534_040 0.1183357126 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
14 Hb_003581_110 0.1197009085 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
15 Hb_001178_060 0.1199661723 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
16 Hb_005333_020 0.1200660687 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
17 Hb_001663_110 0.1217906141 - - RNA binding protein, putative [Ricinus communis]
18 Hb_009801_010 0.121865565 - - ATPase inhibitor, putative [Ricinus communis]
19 Hb_005016_030 0.1219984017 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
20 Hb_000035_400 0.1222801835 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]

Gene co-expression network

sample Hb_000264_060 Hb_000264_060 Hb_001348_140 Hb_001348_140 Hb_000264_060--Hb_001348_140 Hb_010298_020 Hb_010298_020 Hb_000264_060--Hb_010298_020 Hb_000322_170 Hb_000322_170 Hb_000264_060--Hb_000322_170 Hb_074683_020 Hb_074683_020 Hb_000264_060--Hb_074683_020 Hb_000093_130 Hb_000093_130 Hb_000264_060--Hb_000093_130 Hb_009615_110 Hb_009615_110 Hb_000264_060--Hb_009615_110 Hb_000640_210 Hb_000640_210 Hb_001348_140--Hb_000640_210 Hb_000500_290 Hb_000500_290 Hb_001348_140--Hb_000500_290 Hb_005028_010 Hb_005028_010 Hb_001348_140--Hb_005028_010 Hb_002728_020 Hb_002728_020 Hb_001348_140--Hb_002728_020 Hb_001348_140--Hb_009615_110 Hb_001616_090 Hb_001616_090 Hb_010298_020--Hb_001616_090 Hb_025048_030 Hb_025048_030 Hb_010298_020--Hb_025048_030 Hb_001663_110 Hb_001663_110 Hb_010298_020--Hb_001663_110 Hb_005701_040 Hb_005701_040 Hb_010298_020--Hb_005701_040 Hb_000116_110 Hb_000116_110 Hb_010298_020--Hb_000116_110 Hb_001178_060 Hb_001178_060 Hb_000322_170--Hb_001178_060 Hb_000322_170--Hb_000640_210 Hb_005016_030 Hb_005016_030 Hb_000322_170--Hb_005016_030 Hb_004032_350 Hb_004032_350 Hb_000322_170--Hb_004032_350 Hb_000076_290 Hb_000076_290 Hb_000322_170--Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_000322_170--Hb_000174_200 Hb_074683_020--Hb_000093_130 Hb_000808_060 Hb_000808_060 Hb_074683_020--Hb_000808_060 Hb_003581_110 Hb_003581_110 Hb_074683_020--Hb_003581_110 Hb_001227_110 Hb_001227_110 Hb_074683_020--Hb_001227_110 Hb_007416_200 Hb_007416_200 Hb_074683_020--Hb_007416_200 Hb_000093_130--Hb_001227_110 Hb_000116_570 Hb_000116_570 Hb_000093_130--Hb_000116_570 Hb_001473_190 Hb_001473_190 Hb_000093_130--Hb_001473_190 Hb_000025_750 Hb_000025_750 Hb_000093_130--Hb_000025_750 Hb_000093_130--Hb_007416_200 Hb_000318_140 Hb_000318_140 Hb_009615_110--Hb_000318_140 Hb_000320_440 Hb_000320_440 Hb_009615_110--Hb_000320_440 Hb_002955_010 Hb_002955_010 Hb_009615_110--Hb_002955_010 Hb_001009_050 Hb_001009_050 Hb_009615_110--Hb_001009_050 Hb_000270_450 Hb_000270_450 Hb_009615_110--Hb_000270_450 Hb_006173_020 Hb_006173_020 Hb_009615_110--Hb_006173_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.51842 3.85859 1.39142 0.722119 9.03045 9.62545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.00856 3.51678 0.982947 0.66957 0.713983

CAGE analysis