Hb_000264_110

Information

Type -
Description -
Location Contig264: 117207-118985
Sequence    

Annotation

kegg
ID rcu:RCOM_0935910
description expressed protein, putative
nr
ID XP_012091575.1
description PREDICTED: trafficking protein particle complex subunit 13 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21416 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_110 0.0 - - PREDICTED: trafficking protein particle complex subunit 13 [Jatropha curcas]
2 Hb_003929_270 0.0930701142 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
3 Hb_005695_120 0.0954833882 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
4 Hb_002053_140 0.1173773864 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
5 Hb_000127_140 0.118214031 - - transporter-related family protein [Populus trichocarpa]
6 Hb_000050_200 0.1189316619 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
7 Hb_003470_090 0.124462667 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
8 Hb_000212_450 0.126572892 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
9 Hb_001427_160 0.1267641965 - - o-methyltransferase, putative [Ricinus communis]
10 Hb_003925_020 0.1268575723 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
11 Hb_009787_030 0.1276321165 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
12 Hb_052805_010 0.1285226953 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
13 Hb_000141_080 0.1291328366 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
14 Hb_006816_260 0.131337301 - - hypothetical protein JCGZ_23244 [Jatropha curcas]
15 Hb_000028_350 0.131519612 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
16 Hb_001366_370 0.1321979363 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
17 Hb_000136_100 0.1325289639 - - PREDICTED: syntaxin-61 [Jatropha curcas]
18 Hb_008245_010 0.1331066539 - - PREDICTED: protein NEDD1 [Jatropha curcas]
19 Hb_005305_110 0.1353272958 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
20 Hb_001268_050 0.1361796831 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000264_110 Hb_000264_110 Hb_003929_270 Hb_003929_270 Hb_000264_110--Hb_003929_270 Hb_005695_120 Hb_005695_120 Hb_000264_110--Hb_005695_120 Hb_002053_140 Hb_002053_140 Hb_000264_110--Hb_002053_140 Hb_000127_140 Hb_000127_140 Hb_000264_110--Hb_000127_140 Hb_000050_200 Hb_000050_200 Hb_000264_110--Hb_000050_200 Hb_003470_090 Hb_003470_090 Hb_000264_110--Hb_003470_090 Hb_003929_270--Hb_002053_140 Hb_086085_020 Hb_086085_020 Hb_003929_270--Hb_086085_020 Hb_000141_080 Hb_000141_080 Hb_003929_270--Hb_000141_080 Hb_000735_110 Hb_000735_110 Hb_003929_270--Hb_000735_110 Hb_030736_020 Hb_030736_020 Hb_003929_270--Hb_030736_020 Hb_006618_120 Hb_006618_120 Hb_003929_270--Hb_006618_120 Hb_005054_080 Hb_005054_080 Hb_005695_120--Hb_005054_080 Hb_002298_030 Hb_002298_030 Hb_005695_120--Hb_002298_030 Hb_052805_010 Hb_052805_010 Hb_005695_120--Hb_052805_010 Hb_004032_030 Hb_004032_030 Hb_005695_120--Hb_004032_030 Hb_005695_120--Hb_003929_270 Hb_002053_140--Hb_030736_020 Hb_001427_160 Hb_001427_160 Hb_002053_140--Hb_001427_160 Hb_002053_140--Hb_000141_080 Hb_001366_370 Hb_001366_370 Hb_002053_140--Hb_001366_370 Hb_012796_020 Hb_012796_020 Hb_002053_140--Hb_012796_020 Hb_007894_010 Hb_007894_010 Hb_000127_140--Hb_007894_010 Hb_008147_090 Hb_008147_090 Hb_000127_140--Hb_008147_090 Hb_001951_130 Hb_001951_130 Hb_000127_140--Hb_001951_130 Hb_001195_060 Hb_001195_060 Hb_000127_140--Hb_001195_060 Hb_000666_100 Hb_000666_100 Hb_000127_140--Hb_000666_100 Hb_002184_090 Hb_002184_090 Hb_000127_140--Hb_002184_090 Hb_003994_230 Hb_003994_230 Hb_000050_200--Hb_003994_230 Hb_000200_020 Hb_000200_020 Hb_000050_200--Hb_000200_020 Hb_000468_060 Hb_000468_060 Hb_000050_200--Hb_000468_060 Hb_002681_100 Hb_002681_100 Hb_000050_200--Hb_002681_100 Hb_001575_090 Hb_001575_090 Hb_000050_200--Hb_001575_090 Hb_001828_150 Hb_001828_150 Hb_000050_200--Hb_001828_150 Hb_003177_030 Hb_003177_030 Hb_003470_090--Hb_003177_030 Hb_000749_220 Hb_000749_220 Hb_003470_090--Hb_000749_220 Hb_000096_010 Hb_000096_010 Hb_003470_090--Hb_000096_010 Hb_005490_030 Hb_005490_030 Hb_003470_090--Hb_005490_030 Hb_001159_130 Hb_001159_130 Hb_003470_090--Hb_001159_130 Hb_007460_020 Hb_007460_020 Hb_003470_090--Hb_007460_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.230778 0.0598381 0.313895 0.884745 0.341285 0.324132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.405301 0.424543 0.538971 0.485527 0.19824

CAGE analysis