Hb_000264_170

Information

Type -
Description -
Location Contig264: 147879-152186
Sequence    

Annotation

kegg
ID rcu:RCOM_0935960
description hypothetical protein
nr
ID XP_012091578.1
description PREDICTED: uncharacterized protein LOC105649522 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RZ72
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0935960 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tetratricopeptide repeat-like superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27600: 147889-152097
cDNA
(Sanger)
(ID:Location)		 008_K18.ab1: 151404-152097

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_170 0.0 - - PREDICTED: uncharacterized protein LOC105649522 [Jatropha curcas]
2 Hb_007044_140 0.0848978791 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
3 Hb_000032_100 0.0898161029 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
4 Hb_000445_420 0.094534441 - - protein transporter, putative [Ricinus communis]
5 Hb_000580_190 0.0947615673 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
6 Hb_007441_120 0.0965154352 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
7 Hb_002016_110 0.0971643375 - - transducin family protein [Populus trichocarpa]
8 Hb_019654_190 0.0977154735 - - protein kinase, putative [Ricinus communis]
9 Hb_002054_040 0.0977501588 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
10 Hb_000041_050 0.0995897674 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
11 Hb_010931_120 0.1007274644 - - myosin heavy chain-related family protein [Populus trichocarpa]
12 Hb_000100_100 0.1013438065 - - hypothetical protein VITISV_027675 [Vitis vinifera]
13 Hb_090804_010 0.102003459 - - ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_004055_030 0.1024223331 - - casein kinase, putative [Ricinus communis]
15 Hb_001009_170 0.1031903519 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
16 Hb_000166_110 0.103202543 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
17 Hb_062135_030 0.103246817 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
18 Hb_006400_060 0.1039333951 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
19 Hb_000483_200 0.1042202483 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
20 Hb_006915_050 0.1060193297 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000264_170 Hb_000264_170 Hb_007044_140 Hb_007044_140 Hb_000264_170--Hb_007044_140 Hb_000032_100 Hb_000032_100 Hb_000264_170--Hb_000032_100 Hb_000445_420 Hb_000445_420 Hb_000264_170--Hb_000445_420 Hb_000580_190 Hb_000580_190 Hb_000264_170--Hb_000580_190 Hb_007441_120 Hb_007441_120 Hb_000264_170--Hb_007441_120 Hb_002016_110 Hb_002016_110 Hb_000264_170--Hb_002016_110 Hb_007044_140--Hb_002016_110 Hb_006400_060 Hb_006400_060 Hb_007044_140--Hb_006400_060 Hb_000011_200 Hb_000011_200 Hb_007044_140--Hb_000011_200 Hb_001009_170 Hb_001009_170 Hb_007044_140--Hb_001009_170 Hb_001199_020 Hb_001199_020 Hb_007044_140--Hb_001199_020 Hb_000028_480 Hb_000028_480 Hb_007044_140--Hb_000028_480 Hb_000832_020 Hb_000832_020 Hb_000032_100--Hb_000832_020 Hb_019654_190 Hb_019654_190 Hb_000032_100--Hb_019654_190 Hb_028089_010 Hb_028089_010 Hb_000032_100--Hb_028089_010 Hb_000723_130 Hb_000723_130 Hb_000032_100--Hb_000723_130 Hb_002311_040 Hb_002311_040 Hb_000032_100--Hb_002311_040 Hb_090804_010 Hb_090804_010 Hb_000032_100--Hb_090804_010 Hb_000445_420--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_000445_420--Hb_005663_060 Hb_000445_420--Hb_002016_110 Hb_004055_030 Hb_004055_030 Hb_000445_420--Hb_004055_030 Hb_006922_100 Hb_006922_100 Hb_000445_420--Hb_006922_100 Hb_010931_120 Hb_010931_120 Hb_000445_420--Hb_010931_120 Hb_000041_050 Hb_000041_050 Hb_000580_190--Hb_000041_050 Hb_004920_120 Hb_004920_120 Hb_000580_190--Hb_004920_120 Hb_011671_180 Hb_011671_180 Hb_000580_190--Hb_011671_180 Hb_002810_030 Hb_002810_030 Hb_000580_190--Hb_002810_030 Hb_007317_180 Hb_007317_180 Hb_000580_190--Hb_007317_180 Hb_007441_120--Hb_005663_060 Hb_007441_120--Hb_002016_110 Hb_028872_140 Hb_028872_140 Hb_007441_120--Hb_028872_140 Hb_007441_120--Hb_004055_030 Hb_007441_120--Hb_006922_100 Hb_006915_050 Hb_006915_050 Hb_002016_110--Hb_006915_050 Hb_002026_180 Hb_002026_180 Hb_002016_110--Hb_002026_180 Hb_002016_110--Hb_005663_060 Hb_189003_080 Hb_189003_080 Hb_002016_110--Hb_189003_080 Hb_000030_300 Hb_000030_300 Hb_002016_110--Hb_000030_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2366 11.0385 7.06119 12.0364 15.804 33.3241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.7198 12.7499 32.1669 22.0067 14.3344

CAGE analysis