Hb_000264_280

Information

Type -
Description -
Location Contig264: 252680-253967
Sequence    

Annotation

kegg
ID rcu:RCOM_0936330
description rnf5, putative
nr
ID XP_012091596.1
description PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
swissprot
ID Q6R567
description E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1
trembl
ID A0A067JDX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21434 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase rma1h1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27620: 252682-256707 , PASA_asmbl_27621: 254806-254984
cDNA
(Sanger)
(ID:Location)		 035_J19.ab1: 252996-256707 , 045_P22.ab1: 253032-256707

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_280 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
2 Hb_003664_030 0.085027075 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
3 Hb_000108_150 0.0899994969 - - alpha/beta hydrolase, putative [Ricinus communis]
4 Hb_000061_250 0.0911540255 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
5 Hb_001269_500 0.0920778291 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
6 Hb_003948_020 0.0933913195 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
7 Hb_001649_030 0.0933973741 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
8 Hb_000684_200 0.0967879632 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
9 Hb_005181_120 0.0979642706 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_005784_030 0.1004557528 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
11 Hb_007904_060 0.1033955243 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
12 Hb_004223_270 0.105050175 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
13 Hb_158092_100 0.1053260516 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
14 Hb_006420_010 0.1068655649 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
15 Hb_000045_050 0.1071465218 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
16 Hb_000005_100 0.1072510858 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
17 Hb_000834_060 0.1087232766 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_005116_100 0.1089040225 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
19 Hb_002374_450 0.1096263939 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
20 Hb_000032_390 0.1096644744 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]

Gene co-expression network

sample Hb_000264_280 Hb_000264_280 Hb_003664_030 Hb_003664_030 Hb_000264_280--Hb_003664_030 Hb_000108_150 Hb_000108_150 Hb_000264_280--Hb_000108_150 Hb_000061_250 Hb_000061_250 Hb_000264_280--Hb_000061_250 Hb_001269_500 Hb_001269_500 Hb_000264_280--Hb_001269_500 Hb_003948_020 Hb_003948_020 Hb_000264_280--Hb_003948_020 Hb_001649_030 Hb_001649_030 Hb_000264_280--Hb_001649_030 Hb_003664_030--Hb_003948_020 Hb_005784_030 Hb_005784_030 Hb_003664_030--Hb_005784_030 Hb_148146_010 Hb_148146_010 Hb_003664_030--Hb_148146_010 Hb_003752_090 Hb_003752_090 Hb_003664_030--Hb_003752_090 Hb_000834_060 Hb_000834_060 Hb_003664_030--Hb_000834_060 Hb_000108_150--Hb_000061_250 Hb_000045_050 Hb_000045_050 Hb_000108_150--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000108_150--Hb_071079_020 Hb_005181_120 Hb_005181_120 Hb_000108_150--Hb_005181_120 Hb_007904_060 Hb_007904_060 Hb_000108_150--Hb_007904_060 Hb_000061_250--Hb_000045_050 Hb_000544_080 Hb_000544_080 Hb_000061_250--Hb_000544_080 Hb_000061_250--Hb_003948_020 Hb_000390_210 Hb_000390_210 Hb_000061_250--Hb_000390_210 Hb_001269_500--Hb_001649_030 Hb_000336_200 Hb_000336_200 Hb_001269_500--Hb_000336_200 Hb_009687_020 Hb_009687_020 Hb_001269_500--Hb_009687_020 Hb_000665_270 Hb_000665_270 Hb_001269_500--Hb_000665_270 Hb_006198_130 Hb_006198_130 Hb_001269_500--Hb_006198_130 Hb_002411_100 Hb_002411_100 Hb_003948_020--Hb_002411_100 Hb_003948_020--Hb_000045_050 Hb_010557_010 Hb_010557_010 Hb_003948_020--Hb_010557_010 Hb_002928_030 Hb_002928_030 Hb_001649_030--Hb_002928_030 Hb_001649_030--Hb_000665_270 Hb_001649_030--Hb_003752_090 Hb_000358_040 Hb_000358_040 Hb_001649_030--Hb_000358_040 Hb_003376_390 Hb_003376_390 Hb_001649_030--Hb_003376_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75761 5.44046 20.4293 12.6742 1.58226 1.88749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.10227 4.27846 1.23845 2.90698 29.787

CAGE analysis