Hb_000264_320

Information

Type -
Description -
Location Contig264: 303875-305641
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05200g
description pentatricopeptide repeat-containing family protein
nr
ID XP_012091600.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
swissprot
ID P93011
description Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
trembl
ID A0A067JN74
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21440 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at2g33760

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27626: 304944-305204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_320 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
2 Hb_008775_040 0.0382752894 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
3 Hb_002636_100 0.070457867 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
4 Hb_003020_050 0.0707024774 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000140_230 0.0725946093 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
6 Hb_000175_220 0.0778541135 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
7 Hb_015807_070 0.082627092 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
8 Hb_008500_010 0.0864420546 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
9 Hb_001247_070 0.0877932622 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
10 Hb_010172_090 0.0898674323 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000174_220 0.0901075237 - - cohesin subunit rad21, putative [Ricinus communis]
12 Hb_000890_050 0.0903006102 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
13 Hb_002043_140 0.0918289174 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
14 Hb_000977_120 0.0930135773 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
15 Hb_001584_150 0.0933140903 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
16 Hb_001967_030 0.0945504428 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
17 Hb_048219_010 0.0961665289 - - coronatine-insensitive 1 [Hevea brasiliensis]
18 Hb_001268_380 0.0961670729 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
19 Hb_006316_040 0.096558113 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
20 Hb_000866_120 0.0970489614 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]

Gene co-expression network

sample Hb_000264_320 Hb_000264_320 Hb_008775_040 Hb_008775_040 Hb_000264_320--Hb_008775_040 Hb_002636_100 Hb_002636_100 Hb_000264_320--Hb_002636_100 Hb_003020_050 Hb_003020_050 Hb_000264_320--Hb_003020_050 Hb_000140_230 Hb_000140_230 Hb_000264_320--Hb_000140_230 Hb_000175_220 Hb_000175_220 Hb_000264_320--Hb_000175_220 Hb_015807_070 Hb_015807_070 Hb_000264_320--Hb_015807_070 Hb_008775_040--Hb_000175_220 Hb_008775_040--Hb_002636_100 Hb_008775_040--Hb_003020_050 Hb_008775_040--Hb_000140_230 Hb_000330_040 Hb_000330_040 Hb_008775_040--Hb_000330_040 Hb_002263_040 Hb_002263_040 Hb_002636_100--Hb_002263_040 Hb_002798_070 Hb_002798_070 Hb_002636_100--Hb_002798_070 Hb_000322_150 Hb_000322_150 Hb_002636_100--Hb_000322_150 Hb_000796_180 Hb_000796_180 Hb_002636_100--Hb_000796_180 Hb_003020_050--Hb_000140_230 Hb_073562_010 Hb_073562_010 Hb_003020_050--Hb_073562_010 Hb_001956_200 Hb_001956_200 Hb_003020_050--Hb_001956_200 Hb_168697_010 Hb_168697_010 Hb_003020_050--Hb_168697_010 Hb_002316_150 Hb_002316_150 Hb_000140_230--Hb_002316_150 Hb_000140_230--Hb_168697_010 Hb_048219_010 Hb_048219_010 Hb_000140_230--Hb_048219_010 Hb_004767_050 Hb_004767_050 Hb_000175_220--Hb_004767_050 Hb_000175_220--Hb_002636_100 Hb_001123_290 Hb_001123_290 Hb_000175_220--Hb_001123_290 Hb_001828_130 Hb_001828_130 Hb_000175_220--Hb_001828_130 Hb_000174_220 Hb_000174_220 Hb_015807_070--Hb_000174_220 Hb_001021_170 Hb_001021_170 Hb_015807_070--Hb_001021_170 Hb_007416_180 Hb_007416_180 Hb_015807_070--Hb_007416_180 Hb_004684_010 Hb_004684_010 Hb_015807_070--Hb_004684_010 Hb_008500_010 Hb_008500_010 Hb_015807_070--Hb_008500_010 Hb_011491_010 Hb_011491_010 Hb_015807_070--Hb_011491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.09298 1.60005 0.452549 0.359489 0.900059 0.957608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.440603 0.713716 1.34857 0.804192 0.643895

CAGE analysis