Hb_000264_330

Information

Type -
Description -
Location Contig264: 306117-307806
Sequence    

Annotation

kegg
ID fve:101294611
description putative ribonuclease H protein At1g65750-like
nr
ID XP_012441796.1
description PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID B9F4A9
description Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_05904 PE=4 SV=1
Gene Ontology
ID GO:0003676
description beta-amyrin 28-oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_330 0.0 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
2 Hb_000139_210 0.0026355402 - - -
3 Hb_004970_080 0.0089084665 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
4 Hb_005946_180 0.0112448825 - - PREDICTED: uncharacterized protein LOC100818788 [Glycine max]
5 Hb_001950_130 0.0112804738 - - -
6 Hb_010534_030 0.0125351183 - - calcineurin-like phosphoesterase [Manihot esculenta]
7 Hb_000752_030 0.0129511438 transcription factor TF Family: bHLH hypothetical protein RCOM_0978110 [Ricinus communis]
8 Hb_001410_050 0.1397913552 - - putative polyprotein [Oryza sativa Japonica Group]
9 Hb_006355_120 0.144799148 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002259_180 0.1629053933 - - -
11 Hb_002435_020 0.2252636296 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
12 Hb_114146_010 0.262754733 - - hypothetical protein JCGZ_15608 [Jatropha curcas]
13 Hb_000069_580 0.2634149648 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008221_020 0.291629837 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
15 Hb_011174_030 0.2949764637 - - -
16 Hb_003147_010 0.3015920862 - - PREDICTED: bark storage protein A-like [Jatropha curcas]
17 Hb_054865_070 0.3108405018 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
18 Hb_002890_070 0.3300265339 - - ATP-dependent RNA helicase family protein [Populus trichocarpa]
19 Hb_107429_010 0.338467577 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
20 Hb_001348_200 0.3606402012 - - -

Gene co-expression network

sample Hb_000264_330 Hb_000264_330 Hb_000139_210 Hb_000139_210 Hb_000264_330--Hb_000139_210 Hb_004970_080 Hb_004970_080 Hb_000264_330--Hb_004970_080 Hb_005946_180 Hb_005946_180 Hb_000264_330--Hb_005946_180 Hb_001950_130 Hb_001950_130 Hb_000264_330--Hb_001950_130 Hb_010534_030 Hb_010534_030 Hb_000264_330--Hb_010534_030 Hb_000752_030 Hb_000752_030 Hb_000264_330--Hb_000752_030 Hb_000139_210--Hb_005946_180 Hb_000139_210--Hb_004970_080 Hb_000139_210--Hb_001950_130 Hb_000139_210--Hb_010534_030 Hb_000139_210--Hb_000752_030 Hb_004970_080--Hb_001950_130 Hb_004970_080--Hb_010534_030 Hb_004970_080--Hb_000752_030 Hb_004970_080--Hb_005946_180 Hb_005946_180--Hb_001950_130 Hb_005946_180--Hb_010534_030 Hb_005946_180--Hb_000752_030 Hb_001950_130--Hb_010534_030 Hb_001950_130--Hb_000752_030 Hb_010534_030--Hb_000752_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0344373 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0776279 0 0 0

CAGE analysis