Hb_000265_010

Information

Type -
Description -
Location Contig265: 4746-7039
Sequence    

Annotation

kegg
ID rcu:RCOM_0415160
description amino acid transporter, putative
nr
ID XP_002533728.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9FF99
description Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=2 SV=1
trembl
ID B9T659
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0415160 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable amino acid permease 7 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27680: 5849-6126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000265_010 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_000300_570 0.0736400381 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
3 Hb_003086_200 0.0804577595 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
4 Hb_012053_030 0.0819878099 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
5 Hb_002007_230 0.096938035 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
6 Hb_012395_070 0.098619627 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
7 Hb_001489_030 0.103130243 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
8 Hb_151364_010 0.1075128201 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
9 Hb_005797_030 0.1100500347 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
10 Hb_001838_010 0.1102920667 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
11 Hb_001104_280 0.1121308761 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
12 Hb_000043_080 0.1151395506 - - lipid binding protein, putative [Ricinus communis]
13 Hb_186298_010 0.1165369647 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_019229_020 0.1174823417 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
15 Hb_005489_160 0.1181224432 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
16 Hb_008503_020 0.1240067573 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_000322_200 0.1244813787 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
18 Hb_001953_130 0.1255971082 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
19 Hb_000380_040 0.1295249323 - - bel1 homeotic protein, putative [Ricinus communis]
20 Hb_002003_020 0.1325858432 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000265_010 Hb_000265_010 Hb_000300_570 Hb_000300_570 Hb_000265_010--Hb_000300_570 Hb_003086_200 Hb_003086_200 Hb_000265_010--Hb_003086_200 Hb_012053_030 Hb_012053_030 Hb_000265_010--Hb_012053_030 Hb_002007_230 Hb_002007_230 Hb_000265_010--Hb_002007_230 Hb_012395_070 Hb_012395_070 Hb_000265_010--Hb_012395_070 Hb_001489_030 Hb_001489_030 Hb_000265_010--Hb_001489_030 Hb_000300_570--Hb_012053_030 Hb_000300_570--Hb_003086_200 Hb_000300_570--Hb_002007_230 Hb_000300_570--Hb_001489_030 Hb_000185_060 Hb_000185_060 Hb_000300_570--Hb_000185_060 Hb_003086_200--Hb_002007_230 Hb_005797_030 Hb_005797_030 Hb_003086_200--Hb_005797_030 Hb_000043_080 Hb_000043_080 Hb_003086_200--Hb_000043_080 Hb_003086_200--Hb_012053_030 Hb_008053_070 Hb_008053_070 Hb_012053_030--Hb_008053_070 Hb_012053_030--Hb_000185_060 Hb_007666_040 Hb_007666_040 Hb_012053_030--Hb_007666_040 Hb_002007_230--Hb_005797_030 Hb_001864_010 Hb_001864_010 Hb_002007_230--Hb_001864_010 Hb_151364_010 Hb_151364_010 Hb_002007_230--Hb_151364_010 Hb_002805_150 Hb_002805_150 Hb_012395_070--Hb_002805_150 Hb_012753_200 Hb_012753_200 Hb_012395_070--Hb_012753_200 Hb_012395_070--Hb_005797_030 Hb_001104_280 Hb_001104_280 Hb_012395_070--Hb_001104_280 Hb_004574_010 Hb_004574_010 Hb_012395_070--Hb_004574_010 Hb_001489_030--Hb_000043_080 Hb_008503_020 Hb_008503_020 Hb_001489_030--Hb_008503_020 Hb_002917_030 Hb_002917_030 Hb_001489_030--Hb_002917_030 Hb_001489_030--Hb_012053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 18.0416 1.10603 2.42562 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0357573 0.0281293 0 20.8642 0.761013

CAGE analysis