Hb_000265_020

Information

Type -
Description -
Location Contig265: 14019-14309
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16980g
description hypothetical protein
nr
ID XP_006377988.1
description hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FXD0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0011s16980g PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable amino acid permease 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000265_020 0.0 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
2 Hb_033045_010 0.078051568 - - copine, putative [Ricinus communis]
3 Hb_000489_020 0.081672672 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
4 Hb_002085_070 0.1022315653 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
5 Hb_006970_150 0.1107919344 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
6 Hb_000521_290 0.1144466657 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
7 Hb_012018_020 0.1151214758 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Eucalyptus grandis]
8 Hb_152718_010 0.1218903215 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
9 Hb_000002_100 0.1243523671 - - phosphate transporter [Manihot esculenta]
10 Hb_075449_040 0.1263036701 - - PREDICTED: meiotic recombination protein SPO11-1 [Jatropha curcas]
11 Hb_001514_100 0.1271266675 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
12 Hb_000512_080 0.1307233188 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_000075_110 0.1314886384 - - aldo-keto reductase, putative [Ricinus communis]
14 Hb_007765_140 0.1377681633 - - PREDICTED: protein NRT1/ PTR FAMILY 8.1-like [Jatropha curcas]
15 Hb_000836_560 0.138614265 - - -
16 Hb_165404_010 0.1389248246 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
17 Hb_063523_010 0.1390432858 - - -
18 Hb_001769_030 0.1422746939 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
19 Hb_000359_280 0.1427762871 - - hypothetical protein OsI_15300 [Oryza sativa Indica Group]
20 Hb_001102_270 0.1430574352 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000265_020 Hb_000265_020 Hb_033045_010 Hb_033045_010 Hb_000265_020--Hb_033045_010 Hb_000489_020 Hb_000489_020 Hb_000265_020--Hb_000489_020 Hb_002085_070 Hb_002085_070 Hb_000265_020--Hb_002085_070 Hb_006970_150 Hb_006970_150 Hb_000265_020--Hb_006970_150 Hb_000521_290 Hb_000521_290 Hb_000265_020--Hb_000521_290 Hb_012018_020 Hb_012018_020 Hb_000265_020--Hb_012018_020 Hb_033045_010--Hb_006970_150 Hb_063523_010 Hb_063523_010 Hb_033045_010--Hb_063523_010 Hb_033045_010--Hb_000489_020 Hb_003337_050 Hb_003337_050 Hb_033045_010--Hb_003337_050 Hb_031862_020 Hb_031862_020 Hb_033045_010--Hb_031862_020 Hb_001355_110 Hb_001355_110 Hb_000489_020--Hb_001355_110 Hb_005333_100 Hb_005333_100 Hb_000489_020--Hb_005333_100 Hb_001623_470 Hb_001623_470 Hb_000489_020--Hb_001623_470 Hb_152718_010 Hb_152718_010 Hb_000489_020--Hb_152718_010 Hb_001769_030 Hb_001769_030 Hb_000489_020--Hb_001769_030 Hb_001514_100 Hb_001514_100 Hb_002085_070--Hb_001514_100 Hb_002085_070--Hb_000521_290 Hb_157980_010 Hb_157980_010 Hb_002085_070--Hb_157980_010 Hb_000002_100 Hb_000002_100 Hb_002085_070--Hb_000002_100 Hb_002085_070--Hb_012018_020 Hb_000075_110 Hb_000075_110 Hb_006970_150--Hb_000075_110 Hb_002518_270 Hb_002518_270 Hb_006970_150--Hb_002518_270 Hb_000120_070 Hb_000120_070 Hb_006970_150--Hb_000120_070 Hb_008948_080 Hb_008948_080 Hb_006970_150--Hb_008948_080 Hb_000521_290--Hb_000002_100 Hb_020648_020 Hb_020648_020 Hb_000521_290--Hb_020648_020 Hb_010921_060 Hb_010921_060 Hb_000521_290--Hb_010921_060 Hb_000338_030 Hb_000338_030 Hb_000521_290--Hb_000338_030 Hb_000521_290--Hb_001514_100 Hb_012018_020--Hb_000002_100 Hb_012018_020--Hb_001514_100 Hb_012018_020--Hb_006970_150 Hb_012018_020--Hb_033045_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 45.2522 13.2819 4.67444 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 25.8394 6.77232

CAGE analysis