Hb_000265_050

Information

Type -
Description -
Location Contig265: 67357-72857
Sequence    

Annotation

kegg
ID rcu:RCOM_0558720
description small nuclear ribonucleoprotein sm d1, putative
nr
ID KDO68777.1
description hypothetical protein CISIN_1g033530mg [Citrus sinensis]
swissprot
ID P62315
description Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=3 SV=1
trembl
ID A0A067FZA3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033530mg PE=4 SV=1
Gene Ontology
ID GO:0019013
description small nuclear ribonucleoprotein sm d1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27683: 67361-69768 , PASA_asmbl_27684: 68964-69285
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000265_050 0.0 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
2 Hb_002798_020 0.0638872685 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
3 Hb_004127_020 0.0654254601 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
4 Hb_005063_050 0.0668295057 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
5 Hb_000136_170 0.0713536445 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
6 Hb_003893_050 0.0730425576 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
7 Hb_004459_040 0.074322056 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
8 Hb_004567_120 0.0775613371 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
9 Hb_000920_110 0.0790808026 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
10 Hb_000567_410 0.0796136332 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
11 Hb_007065_010 0.0804614089 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
12 Hb_002687_170 0.0829655649 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
13 Hb_000840_180 0.0836372983 - - protein BOLA2 [Jatropha curcas]
14 Hb_000134_070 0.0840639184 - - 60S ribosomal protein L6, putative [Ricinus communis]
15 Hb_001085_120 0.0846290311 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
16 Hb_008921_020 0.0854339562 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
17 Hb_006541_010 0.0855150053 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
18 Hb_000479_090 0.0870397075 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
19 Hb_000169_040 0.0874462034 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
20 Hb_003226_100 0.0883798286 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000265_050 Hb_000265_050 Hb_002798_020 Hb_002798_020 Hb_000265_050--Hb_002798_020 Hb_004127_020 Hb_004127_020 Hb_000265_050--Hb_004127_020 Hb_005063_050 Hb_005063_050 Hb_000265_050--Hb_005063_050 Hb_000136_170 Hb_000136_170 Hb_000265_050--Hb_000136_170 Hb_003893_050 Hb_003893_050 Hb_000265_050--Hb_003893_050 Hb_004459_040 Hb_004459_040 Hb_000265_050--Hb_004459_040 Hb_007065_010 Hb_007065_010 Hb_002798_020--Hb_007065_010 Hb_007576_170 Hb_007576_170 Hb_002798_020--Hb_007576_170 Hb_003226_100 Hb_003226_100 Hb_002798_020--Hb_003226_100 Hb_002798_020--Hb_004127_020 Hb_002056_050 Hb_002056_050 Hb_002798_020--Hb_002056_050 Hb_000479_090 Hb_000479_090 Hb_004127_020--Hb_000479_090 Hb_004143_150 Hb_004143_150 Hb_004127_020--Hb_004143_150 Hb_004899_370 Hb_004899_370 Hb_004127_020--Hb_004899_370 Hb_000840_180 Hb_000840_180 Hb_004127_020--Hb_000840_180 Hb_005063_050--Hb_003893_050 Hb_008921_020 Hb_008921_020 Hb_005063_050--Hb_008921_020 Hb_010672_060 Hb_010672_060 Hb_005063_050--Hb_010672_060 Hb_000699_160 Hb_000699_160 Hb_005063_050--Hb_000699_160 Hb_143496_010 Hb_143496_010 Hb_005063_050--Hb_143496_010 Hb_002713_070 Hb_002713_070 Hb_000136_170--Hb_002713_070 Hb_000134_070 Hb_000134_070 Hb_000136_170--Hb_000134_070 Hb_001505_020 Hb_001505_020 Hb_000136_170--Hb_001505_020 Hb_003623_050 Hb_003623_050 Hb_000136_170--Hb_003623_050 Hb_004567_120 Hb_004567_120 Hb_000136_170--Hb_004567_120 Hb_000283_110 Hb_000283_110 Hb_003893_050--Hb_000283_110 Hb_002431_050 Hb_002431_050 Hb_003893_050--Hb_002431_050 Hb_003203_040 Hb_003203_040 Hb_003893_050--Hb_003203_040 Hb_003893_050--Hb_010672_060 Hb_000029_200 Hb_000029_200 Hb_003893_050--Hb_000029_200 Hb_033153_060 Hb_033153_060 Hb_004459_040--Hb_033153_060 Hb_004459_040--Hb_007576_170 Hb_000680_140 Hb_000680_140 Hb_004459_040--Hb_000680_140 Hb_006541_010 Hb_006541_010 Hb_004459_040--Hb_006541_010 Hb_002687_170 Hb_002687_170 Hb_004459_040--Hb_002687_170 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.99465 5.58035 6.89063 10.7856 9.85356 11.9529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4802 43.8971 17.0681 8.98658 11.2275

CAGE analysis