Hb_000265_130

Information

Type -
Description -
Location Contig265: 171871-175922
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27698: 174077-175092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000265_130 0.0 - - -
2 Hb_000001_040 0.0840761714 - - unnamed protein product [Coffea canephora]
3 Hb_000261_360 0.1213603898 - - unknown [Lotus japonicus]
4 Hb_010504_030 0.1311998584 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
5 Hb_003581_010 0.141446894 - - hypothetical protein VITISV_004687 [Vitis vinifera]
6 Hb_000176_120 0.1418965396 - - seryl-tRNA synthetase, putative [Ricinus communis]
7 Hb_007188_020 0.1447067846 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
8 Hb_166480_010 0.1476563164 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
9 Hb_116632_010 0.147834401 - - unnamed protein product [Vitis vinifera]
10 Hb_106005_010 0.1529176587 - - EG5651 [Manihot esculenta]
11 Hb_152554_010 0.1602577534 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
12 Hb_008277_030 0.1632866254 - - hypothetical protein CICLE_v10024419mg, partial [Citrus clementina]
13 Hb_000608_180 0.1648036903 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]
14 Hb_006487_060 0.1677650318 - - Defective in cullin neddylation protein, putative [Ricinus communis]
15 Hb_004117_180 0.1702822775 - - -
16 Hb_005085_030 0.1721378613 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
17 Hb_013691_030 0.1728416425 - - hypothetical protein CISIN_1g020131mg [Citrus sinensis]
18 Hb_168737_010 0.1735982803 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_008221_110 0.1759260001 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
20 Hb_012305_040 0.1788437821 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]

Gene co-expression network

sample Hb_000265_130 Hb_000265_130 Hb_000001_040 Hb_000001_040 Hb_000265_130--Hb_000001_040 Hb_000261_360 Hb_000261_360 Hb_000265_130--Hb_000261_360 Hb_010504_030 Hb_010504_030 Hb_000265_130--Hb_010504_030 Hb_003581_010 Hb_003581_010 Hb_000265_130--Hb_003581_010 Hb_000176_120 Hb_000176_120 Hb_000265_130--Hb_000176_120 Hb_007188_020 Hb_007188_020 Hb_000265_130--Hb_007188_020 Hb_106005_010 Hb_106005_010 Hb_000001_040--Hb_106005_010 Hb_000001_040--Hb_007188_020 Hb_000001_040--Hb_000176_120 Hb_004117_180 Hb_004117_180 Hb_000001_040--Hb_004117_180 Hb_000001_040--Hb_003581_010 Hb_000261_360--Hb_010504_030 Hb_000261_360--Hb_000176_120 Hb_000261_360--Hb_000001_040 Hb_166480_010 Hb_166480_010 Hb_000261_360--Hb_166480_010 Hb_008277_030 Hb_008277_030 Hb_000261_360--Hb_008277_030 Hb_128998_010 Hb_128998_010 Hb_010504_030--Hb_128998_010 Hb_010504_030--Hb_000176_120 Hb_000327_290 Hb_000327_290 Hb_010504_030--Hb_000327_290 Hb_010504_030--Hb_000001_040 Hb_000007_460 Hb_000007_460 Hb_010504_030--Hb_000007_460 Hb_168737_010 Hb_168737_010 Hb_003581_010--Hb_168737_010 Hb_003581_010--Hb_128998_010 Hb_003581_010--Hb_000007_460 Hb_116632_010 Hb_116632_010 Hb_003581_010--Hb_116632_010 Hb_005054_070 Hb_005054_070 Hb_000176_120--Hb_005054_070 Hb_006487_060 Hb_006487_060 Hb_000176_120--Hb_006487_060 Hb_152554_010 Hb_152554_010 Hb_000176_120--Hb_152554_010 Hb_136731_010 Hb_136731_010 Hb_000176_120--Hb_136731_010 Hb_007188_020--Hb_152554_010 Hb_007188_020--Hb_116632_010 Hb_032927_010 Hb_032927_010 Hb_007188_020--Hb_032927_010 Hb_000812_040 Hb_000812_040 Hb_007188_020--Hb_000812_040 Hb_005085_030 Hb_005085_030 Hb_007188_020--Hb_005085_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0754 2.89353 2.07626 23.5379 8.08531 75.7147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.6314 20.495 6.30867 9.98346 0

CAGE analysis