Hb_000268_020

Information

Type -
Description -
Location Contig268: 16803-23646
Sequence    

Annotation

kegg
ID rcu:RCOM_0655980
description hypothetical protein
nr
ID XP_002533442.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6GNT2
description UPF0454 protein C12orf49 homolog OS=Xenopus laevis PE=2 SV=1
trembl
ID B9T5C3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0655980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27898: 17399-52168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000268_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009775_050 0.0904331894 transcription factor TF Family: Orphans hypothetical protein RCOM_0575190 [Ricinus communis]
3 Hb_001329_230 0.1034628473 - - PREDICTED: peptide chain release factor 1-like, mitochondrial [Jatropha curcas]
4 Hb_002027_070 0.1061446232 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
5 Hb_000627_030 0.1081675117 - - amine oxidase, putative [Ricinus communis]
6 Hb_003673_060 0.1127524304 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
7 Hb_002301_280 0.1157813473 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
8 Hb_010381_120 0.1168105188 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
9 Hb_001009_040 0.1176132897 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
10 Hb_012490_030 0.1189219022 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
11 Hb_005016_170 0.1201492072 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006663_100 0.1221491103 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
13 Hb_002272_180 0.1234384718 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
14 Hb_061908_010 0.1249540709 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
15 Hb_001689_020 0.125879559 - - hypothetical protein JCGZ_10660 [Jatropha curcas]
16 Hb_001350_010 0.1262349925 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
17 Hb_000343_230 0.1267185233 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
18 Hb_000364_060 0.1269103985 - - JHL03K20.4 [Jatropha curcas]
19 Hb_007086_010 0.1288453434 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26-like [Jatropha curcas]
20 Hb_003602_040 0.1303386986 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000268_020 Hb_000268_020 Hb_009775_050 Hb_009775_050 Hb_000268_020--Hb_009775_050 Hb_001329_230 Hb_001329_230 Hb_000268_020--Hb_001329_230 Hb_002027_070 Hb_002027_070 Hb_000268_020--Hb_002027_070 Hb_000627_030 Hb_000627_030 Hb_000268_020--Hb_000627_030 Hb_003673_060 Hb_003673_060 Hb_000268_020--Hb_003673_060 Hb_002301_280 Hb_002301_280 Hb_000268_020--Hb_002301_280 Hb_009775_050--Hb_001329_230 Hb_009118_010 Hb_009118_010 Hb_009775_050--Hb_009118_010 Hb_002272_180 Hb_002272_180 Hb_009775_050--Hb_002272_180 Hb_001341_050 Hb_001341_050 Hb_009775_050--Hb_001341_050 Hb_000076_120 Hb_000076_120 Hb_009775_050--Hb_000076_120 Hb_003602_040 Hb_003602_040 Hb_001329_230--Hb_003602_040 Hb_006663_100 Hb_006663_100 Hb_001329_230--Hb_006663_100 Hb_076787_010 Hb_076787_010 Hb_001329_230--Hb_076787_010 Hb_022137_060 Hb_022137_060 Hb_001329_230--Hb_022137_060 Hb_001329_230--Hb_009118_010 Hb_007317_180 Hb_007317_180 Hb_002027_070--Hb_007317_180 Hb_004970_110 Hb_004970_110 Hb_002027_070--Hb_004970_110 Hb_027472_150 Hb_027472_150 Hb_002027_070--Hb_027472_150 Hb_006114_030 Hb_006114_030 Hb_002027_070--Hb_006114_030 Hb_002027_070--Hb_003673_060 Hb_000500_090 Hb_000500_090 Hb_002027_070--Hb_000500_090 Hb_000889_020 Hb_000889_020 Hb_000627_030--Hb_000889_020 Hb_012490_030 Hb_012490_030 Hb_000627_030--Hb_012490_030 Hb_000486_010 Hb_000486_010 Hb_000627_030--Hb_000486_010 Hb_003058_040 Hb_003058_040 Hb_000627_030--Hb_003058_040 Hb_000627_030--Hb_003673_060 Hb_009133_010 Hb_009133_010 Hb_000627_030--Hb_009133_010 Hb_003673_060--Hb_006114_030 Hb_000046_440 Hb_000046_440 Hb_003673_060--Hb_000046_440 Hb_005839_060 Hb_005839_060 Hb_003673_060--Hb_005839_060 Hb_003673_060--Hb_012490_030 Hb_011794_060 Hb_011794_060 Hb_003673_060--Hb_011794_060 Hb_002272_260 Hb_002272_260 Hb_002301_280--Hb_002272_260 Hb_005389_150 Hb_005389_150 Hb_002301_280--Hb_005389_150 Hb_137403_010 Hb_137403_010 Hb_002301_280--Hb_137403_010 Hb_002107_160 Hb_002107_160 Hb_002301_280--Hb_002107_160 Hb_007101_100 Hb_007101_100 Hb_002301_280--Hb_007101_100 Hb_001009_040 Hb_001009_040 Hb_002301_280--Hb_001009_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2309 1.81667 3.80583 5.69663 12.6923 16.9498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4578 6.86412 3.16738 7.51531 5.17757

CAGE analysis