Hb_000268_050

Information

Type -
Description -
Location Contig268: 53450-53941
Sequence    

Annotation

kegg
ID rcu:RCOM_0655990
description Tetrapyrrole-binding protein, chloroplast precursor, putative
nr
ID XP_012065152.1
description PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
swissprot
ID Q9LX31
description Tetrapyrrole-binding protein, chloroplastic OS=Arabidopsis thaliana GN=GUN4 PE=1 SV=1
trembl
ID A0A067L5U3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20841 PE=4 SV=1
Gene Ontology
ID GO:0019899
description tetrapyrrole-binding chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000268_050 0.0 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
2 Hb_002329_050 0.0467919143 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011362_010 0.0488631328 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
4 Hb_003528_100 0.0518584788 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
5 Hb_000160_120 0.0533123514 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001437_170 0.0568991657 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
7 Hb_096907_010 0.0582659309 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
8 Hb_065774_010 0.0617483475 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
9 Hb_000540_080 0.0651876078 - - PREDICTED: laccase-17 [Jatropha curcas]
10 Hb_046825_010 0.0677660619 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
11 Hb_003787_030 0.0703707516 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006718_030 0.0706738807 - - ATPase, F1 complex, gamma subunit protein [Theobroma cacao]
13 Hb_000883_080 0.0724525625 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_002391_340 0.0725971207 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
15 Hb_000363_070 0.0741420467 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001790_060 0.0752493081 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
17 Hb_001472_150 0.0766172088 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
18 Hb_006573_240 0.077547387 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
19 Hb_000928_260 0.0779604747 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
20 Hb_154064_010 0.0790445244 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]

Gene co-expression network

sample Hb_000268_050 Hb_000268_050 Hb_002329_050 Hb_002329_050 Hb_000268_050--Hb_002329_050 Hb_011362_010 Hb_011362_010 Hb_000268_050--Hb_011362_010 Hb_003528_100 Hb_003528_100 Hb_000268_050--Hb_003528_100 Hb_000160_120 Hb_000160_120 Hb_000268_050--Hb_000160_120 Hb_001437_170 Hb_001437_170 Hb_000268_050--Hb_001437_170 Hb_096907_010 Hb_096907_010 Hb_000268_050--Hb_096907_010 Hb_000883_080 Hb_000883_080 Hb_002329_050--Hb_000883_080 Hb_005483_040 Hb_005483_040 Hb_002329_050--Hb_005483_040 Hb_002329_050--Hb_011362_010 Hb_018487_040 Hb_018487_040 Hb_002329_050--Hb_018487_040 Hb_000928_260 Hb_000928_260 Hb_002329_050--Hb_000928_260 Hb_000540_080 Hb_000540_080 Hb_011362_010--Hb_000540_080 Hb_011362_010--Hb_000883_080 Hb_011362_010--Hb_000160_120 Hb_011362_010--Hb_096907_010 Hb_065774_010 Hb_065774_010 Hb_003528_100--Hb_065774_010 Hb_003528_100--Hb_000160_120 Hb_046825_010 Hb_046825_010 Hb_003528_100--Hb_046825_010 Hb_003528_100--Hb_001437_170 Hb_003528_100--Hb_096907_010 Hb_154064_010 Hb_154064_010 Hb_003528_100--Hb_154064_010 Hb_000160_120--Hb_001437_170 Hb_000160_120--Hb_096907_010 Hb_000115_030 Hb_000115_030 Hb_000160_120--Hb_000115_030 Hb_000160_120--Hb_065774_010 Hb_002391_340 Hb_002391_340 Hb_000160_120--Hb_002391_340 Hb_001437_170--Hb_096907_010 Hb_001437_170--Hb_002391_340 Hb_001437_170--Hb_000115_030 Hb_001437_170--Hb_065774_010 Hb_096907_010--Hb_000115_030 Hb_096907_010--Hb_002391_340 Hb_096907_010--Hb_065774_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.0826 130.426 218.939 0 0.224541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.12708 569.37

CAGE analysis