Hb_000268_090

Information

Type -
Description -
Location Contig268: 115774-118070
Sequence    

Annotation

kegg
ID rcu:RCOM_0656430
description hypothetical protein
nr
ID XP_012065159.1
description PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LGZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20845 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27907: 116536-117361 , PASA_asmbl_27908: 117388-138409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000268_090 0.0 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
2 Hb_021443_070 0.1047413363 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
3 Hb_005333_040 0.1080930324 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
4 Hb_000270_360 0.1095396048 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
5 Hb_005928_060 0.113531274 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
6 Hb_003086_070 0.1197826486 - - PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Jatropha curcas]
7 Hb_000270_840 0.1211013504 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
8 Hb_000098_190 0.1211756961 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
9 Hb_007763_040 0.1220204092 - - -
10 Hb_000538_020 0.1263361389 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
11 Hb_000933_150 0.1290547103 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
12 Hb_002942_020 0.1297851531 - - nucleotide binding protein, putative [Ricinus communis]
13 Hb_012675_090 0.1308748151 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
14 Hb_001502_070 0.1322900427 - - X-linked inhibitor of apoptosis protein, xiap, putative [Ricinus communis]
15 Hb_010368_020 0.1328325065 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
16 Hb_001014_010 0.1341035567 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
17 Hb_002784_040 0.1348452848 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
18 Hb_000714_030 0.1357421656 - - Nucleosome assembly [Gossypium arboreum]
19 Hb_003126_040 0.1358566811 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000015_080 0.1365552079 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000268_090 Hb_000268_090 Hb_021443_070 Hb_021443_070 Hb_000268_090--Hb_021443_070 Hb_005333_040 Hb_005333_040 Hb_000268_090--Hb_005333_040 Hb_000270_360 Hb_000270_360 Hb_000268_090--Hb_000270_360 Hb_005928_060 Hb_005928_060 Hb_000268_090--Hb_005928_060 Hb_003086_070 Hb_003086_070 Hb_000268_090--Hb_003086_070 Hb_000270_840 Hb_000270_840 Hb_000268_090--Hb_000270_840 Hb_004440_090 Hb_004440_090 Hb_021443_070--Hb_004440_090 Hb_000160_170 Hb_000160_170 Hb_021443_070--Hb_000160_170 Hb_000015_080 Hb_000015_080 Hb_021443_070--Hb_000015_080 Hb_012340_080 Hb_012340_080 Hb_021443_070--Hb_012340_080 Hb_000046_280 Hb_000046_280 Hb_021443_070--Hb_000046_280 Hb_004735_040 Hb_004735_040 Hb_021443_070--Hb_004735_040 Hb_033080_010 Hb_033080_010 Hb_005333_040--Hb_033080_010 Hb_006501_150 Hb_006501_150 Hb_005333_040--Hb_006501_150 Hb_005333_040--Hb_000270_840 Hb_000538_020 Hb_000538_020 Hb_005333_040--Hb_000538_020 Hb_000329_690 Hb_000329_690 Hb_005333_040--Hb_000329_690 Hb_004970_200 Hb_004970_200 Hb_005333_040--Hb_004970_200 Hb_000270_360--Hb_000270_840 Hb_002942_020 Hb_002942_020 Hb_000270_360--Hb_002942_020 Hb_000270_360--Hb_006501_150 Hb_027892_060 Hb_027892_060 Hb_000270_360--Hb_027892_060 Hb_007441_340 Hb_007441_340 Hb_000270_360--Hb_007441_340 Hb_012675_090 Hb_012675_090 Hb_000270_360--Hb_012675_090 Hb_000905_190 Hb_000905_190 Hb_005928_060--Hb_000905_190 Hb_005527_050 Hb_005527_050 Hb_005928_060--Hb_005527_050 Hb_001214_130 Hb_001214_130 Hb_005928_060--Hb_001214_130 Hb_000019_230 Hb_000019_230 Hb_005928_060--Hb_000019_230 Hb_005237_010 Hb_005237_010 Hb_005928_060--Hb_005237_010 Hb_000997_020 Hb_000997_020 Hb_005928_060--Hb_000997_020 Hb_003126_040 Hb_003126_040 Hb_003086_070--Hb_003126_040 Hb_002154_120 Hb_002154_120 Hb_003086_070--Hb_002154_120 Hb_000290_020 Hb_000290_020 Hb_003086_070--Hb_000290_020 Hb_001348_070 Hb_001348_070 Hb_003086_070--Hb_001348_070 Hb_000690_130 Hb_000690_130 Hb_003086_070--Hb_000690_130 Hb_003086_070--Hb_005928_060 Hb_000270_840--Hb_000538_020 Hb_000270_840--Hb_000905_190 Hb_000392_270 Hb_000392_270 Hb_000270_840--Hb_000392_270 Hb_002997_170 Hb_002997_170 Hb_000270_840--Hb_002997_170 Hb_001369_650 Hb_001369_650 Hb_000270_840--Hb_001369_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.19905 2.49429 4.75898 1.31957 16.702 8.32943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8 9.42805 5.1808 1.90616 2.85486

CAGE analysis