Hb_000269_040

Information

Type -
Description -
Location Contig269: 46957-50478
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa021229mg
description hypothetical protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID M5WLY8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000269_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_007575_020 0.1106139519 - - cytochrome P450, putative [Ricinus communis]
3 Hb_005852_010 0.140101241 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_094694_010 0.1455852206 - - -
5 Hb_001174_050 0.1459506526 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000248_020 0.1484432708 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
7 Hb_151411_010 0.1491597186 - - -
8 Hb_000209_010 0.1508040496 - - -
9 Hb_039547_010 0.1518533449 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
10 Hb_000916_010 0.152029531 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
11 Hb_017640_010 0.1550592284 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
12 Hb_000192_060 0.1616073344 - - -
13 Hb_000975_060 0.1618640532 - - -
14 Hb_099878_040 0.1637062568 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
15 Hb_009898_060 0.1640560134 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
16 Hb_002990_020 0.1664430156 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
17 Hb_004191_030 0.170513962 - - hypothetical protein POPTR_0013s13140g [Populus trichocarpa]
18 Hb_004899_210 0.1732384445 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
19 Hb_002056_140 0.1739985664 - - -
20 Hb_000061_110 0.1752253901 - - -

Gene co-expression network

sample Hb_000269_040 Hb_000269_040 Hb_007575_020 Hb_007575_020 Hb_000269_040--Hb_007575_020 Hb_005852_010 Hb_005852_010 Hb_000269_040--Hb_005852_010 Hb_094694_010 Hb_094694_010 Hb_000269_040--Hb_094694_010 Hb_001174_050 Hb_001174_050 Hb_000269_040--Hb_001174_050 Hb_000248_020 Hb_000248_020 Hb_000269_040--Hb_000248_020 Hb_151411_010 Hb_151411_010 Hb_000269_040--Hb_151411_010 Hb_004899_210 Hb_004899_210 Hb_007575_020--Hb_004899_210 Hb_045785_010 Hb_045785_010 Hb_007575_020--Hb_045785_010 Hb_000289_090 Hb_000289_090 Hb_007575_020--Hb_000289_090 Hb_008642_050 Hb_008642_050 Hb_007575_020--Hb_008642_050 Hb_017640_010 Hb_017640_010 Hb_007575_020--Hb_017640_010 Hb_004191_030 Hb_004191_030 Hb_005852_010--Hb_004191_030 Hb_002056_140 Hb_002056_140 Hb_005852_010--Hb_002056_140 Hb_005852_010--Hb_151411_010 Hb_000209_010 Hb_000209_010 Hb_005852_010--Hb_000209_010 Hb_000192_060 Hb_000192_060 Hb_005852_010--Hb_000192_060 Hb_094694_010--Hb_000248_020 Hb_000975_060 Hb_000975_060 Hb_094694_010--Hb_000975_060 Hb_039547_010 Hb_039547_010 Hb_094694_010--Hb_039547_010 Hb_000916_010 Hb_000916_010 Hb_094694_010--Hb_000916_010 Hb_099878_040 Hb_099878_040 Hb_094694_010--Hb_099878_040 Hb_094694_010--Hb_000209_010 Hb_001355_060 Hb_001355_060 Hb_001174_050--Hb_001355_060 Hb_159124_010 Hb_159124_010 Hb_001174_050--Hb_159124_010 Hb_005432_020 Hb_005432_020 Hb_001174_050--Hb_005432_020 Hb_101034_010 Hb_101034_010 Hb_001174_050--Hb_101034_010 Hb_181013_010 Hb_181013_010 Hb_001174_050--Hb_181013_010 Hb_000142_090 Hb_000142_090 Hb_001174_050--Hb_000142_090 Hb_000248_020--Hb_000975_060 Hb_000248_020--Hb_099878_040 Hb_000248_020--Hb_039547_010 Hb_000248_020--Hb_000916_010 Hb_000248_020--Hb_159124_010 Hb_151411_010--Hb_000209_010 Hb_151411_010--Hb_000192_060 Hb_151411_010--Hb_000916_010 Hb_151411_010--Hb_039547_010 Hb_001301_070 Hb_001301_070 Hb_151411_010--Hb_001301_070 Hb_151411_010--Hb_094694_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0754686 0 0.00691001 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0138202 0.146939

CAGE analysis