Hb_000269_050

Information

Type -
Description -
Location Contig269: 56923-60105
Sequence    

Annotation

kegg
ID rcu:RCOM_1576650
description beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_012452860.1
description PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
swissprot
ID P26204
description Non-cyanogenic beta-glucosidase OS=Trifolium repens PE=1 SV=1
trembl
ID F6GUD1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g01440 PE=3 SV=1
Gene Ontology
ID GO:0008422
description beta-glucosidase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000269_050 0.0 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
2 Hb_003058_090 0.0459762971 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
3 Hb_000381_140 0.0787479264 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
4 Hb_000296_030 0.0848166061 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
5 Hb_000224_070 0.0930944793 - - -
6 Hb_002874_100 0.1024965356 - - cytochrome P450, putative [Ricinus communis]
7 Hb_007426_100 0.1055441772 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000905_130 0.1084278188 - - PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]
9 Hb_000645_040 0.1106711465 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
10 Hb_001104_290 0.1123664396 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
11 Hb_000363_100 0.112987139 - - -
12 Hb_000270_590 0.1135590945 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
13 Hb_003252_030 0.1139994628 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
14 Hb_000366_070 0.1150438578 - - PREDICTED: protein NRT1/ PTR FAMILY 6.2 [Jatropha curcas]
15 Hb_093084_040 0.1160323849 transcription factor TF Family: LOB hypothetical protein POPTR_0015s09370g [Populus trichocarpa]
16 Hb_007477_020 0.1199861216 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
17 Hb_001277_390 0.1212903596 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
18 Hb_000325_090 0.1214573798 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]
19 Hb_034858_010 0.1219651778 - - -
20 Hb_000566_060 0.1219696126 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000269_050 Hb_000269_050 Hb_003058_090 Hb_003058_090 Hb_000269_050--Hb_003058_090 Hb_000381_140 Hb_000381_140 Hb_000269_050--Hb_000381_140 Hb_000296_030 Hb_000296_030 Hb_000269_050--Hb_000296_030 Hb_000224_070 Hb_000224_070 Hb_000269_050--Hb_000224_070 Hb_002874_100 Hb_002874_100 Hb_000269_050--Hb_002874_100 Hb_007426_100 Hb_007426_100 Hb_000269_050--Hb_007426_100 Hb_007477_020 Hb_007477_020 Hb_003058_090--Hb_007477_020 Hb_003058_090--Hb_002874_100 Hb_003058_090--Hb_007426_100 Hb_003058_090--Hb_000296_030 Hb_001104_290 Hb_001104_290 Hb_003058_090--Hb_001104_290 Hb_000381_140--Hb_000224_070 Hb_000224_050 Hb_000224_050 Hb_000381_140--Hb_000224_050 Hb_000905_130 Hb_000905_130 Hb_000381_140--Hb_000905_130 Hb_002186_120 Hb_002186_120 Hb_000381_140--Hb_002186_120 Hb_000277_040 Hb_000277_040 Hb_000381_140--Hb_000277_040 Hb_000296_030--Hb_000905_130 Hb_000270_590 Hb_000270_590 Hb_000296_030--Hb_000270_590 Hb_000296_030--Hb_000224_070 Hb_001597_040 Hb_001597_040 Hb_000296_030--Hb_001597_040 Hb_002701_200 Hb_002701_200 Hb_000296_030--Hb_002701_200 Hb_001277_390 Hb_001277_390 Hb_000224_070--Hb_001277_390 Hb_118941_010 Hb_118941_010 Hb_000224_070--Hb_118941_010 Hb_000645_040 Hb_000645_040 Hb_000224_070--Hb_000645_040 Hb_000325_090 Hb_000325_090 Hb_000224_070--Hb_000325_090 Hb_120496_010 Hb_120496_010 Hb_000224_070--Hb_120496_010 Hb_001892_040 Hb_001892_040 Hb_000224_070--Hb_001892_040 Hb_033153_030 Hb_033153_030 Hb_002874_100--Hb_033153_030 Hb_002874_100--Hb_007426_100 Hb_000363_100 Hb_000363_100 Hb_002874_100--Hb_000363_100 Hb_002874_100--Hb_001104_290 Hb_000445_480 Hb_000445_480 Hb_002874_100--Hb_000445_480 Hb_003252_030 Hb_003252_030 Hb_002874_100--Hb_003252_030 Hb_007426_100--Hb_033153_030 Hb_000194_030 Hb_000194_030 Hb_007426_100--Hb_000194_030 Hb_007426_100--Hb_000445_480 Hb_001529_010 Hb_001529_010 Hb_007426_100--Hb_001529_010 Hb_002894_020 Hb_002894_020 Hb_007426_100--Hb_002894_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.69216 1.45962 40.9886 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.18908 0

CAGE analysis