Hb_000270_020

Information

Type -
Description -
Location Contig270: 16280-16760
Sequence    

Annotation

kegg
ID pop:POPTR_0015s07630g
description hypothetical protein
nr
ID XP_006374495.1
description hypothetical protein POPTR_0015s07630g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FSJ2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s07630g PE=4 SV=1
Gene Ontology
ID GO:0009535
description hypothetical protein POPTR_0015s07630g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28153: 16519-16835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_020 0.0 - - hypothetical protein POPTR_0015s07630g [Populus trichocarpa]
2 Hb_000347_150 0.0834161923 - - Nucleolysin TIAR [Morus notabilis]
3 Hb_000575_080 0.1100121202 - - PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 isoform X1 [Jatropha curcas]
4 Hb_003299_090 0.110889408 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
5 Hb_001307_140 0.1218758585 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
6 Hb_003073_210 0.1315490143 - - hypothetical protein CISIN_1g036722mg, partial [Citrus sinensis]
7 Hb_139859_010 0.1356646985 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
8 Hb_110364_010 0.1383332795 - - gamma-tubulin complex component, putative [Ricinus communis]
9 Hb_000173_400 0.1385538751 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
10 Hb_005914_090 0.1443320398 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
11 Hb_000453_270 0.1446491428 - - PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Propithecus coquereli]
12 Hb_000260_090 0.1449972277 - - PREDICTED: ubiquitin-conjugating enzyme E2 28 [Gossypium raimondii]
13 Hb_001771_130 0.146308186 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
14 Hb_012016_020 0.1464627982 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
15 Hb_000011_080 0.1524137515 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
16 Hb_002341_030 0.1526689368 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
17 Hb_004316_120 0.1534954963 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Populus euphratica]
18 Hb_006723_020 0.1598200802 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
19 Hb_006455_090 0.160963505 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
20 Hb_002046_040 0.1617039474 - - PREDICTED: topless-related protein 4 [Malus domestica]

Gene co-expression network

sample Hb_000270_020 Hb_000270_020 Hb_000347_150 Hb_000347_150 Hb_000270_020--Hb_000347_150 Hb_000575_080 Hb_000575_080 Hb_000270_020--Hb_000575_080 Hb_003299_090 Hb_003299_090 Hb_000270_020--Hb_003299_090 Hb_001307_140 Hb_001307_140 Hb_000270_020--Hb_001307_140 Hb_003073_210 Hb_003073_210 Hb_000270_020--Hb_003073_210 Hb_139859_010 Hb_139859_010 Hb_000270_020--Hb_139859_010 Hb_000347_150--Hb_003299_090 Hb_000453_270 Hb_000453_270 Hb_000347_150--Hb_000453_270 Hb_000035_120 Hb_000035_120 Hb_000347_150--Hb_000035_120 Hb_005914_090 Hb_005914_090 Hb_000347_150--Hb_005914_090 Hb_000347_150--Hb_001307_140 Hb_000575_080--Hb_001307_140 Hb_050455_010 Hb_050455_010 Hb_000575_080--Hb_050455_010 Hb_000088_020 Hb_000088_020 Hb_000575_080--Hb_000088_020 Hb_000575_080--Hb_003299_090 Hb_007317_190 Hb_007317_190 Hb_000575_080--Hb_007317_190 Hb_005635_010 Hb_005635_010 Hb_003299_090--Hb_005635_010 Hb_003299_090--Hb_005914_090 Hb_003299_090--Hb_001307_140 Hb_012016_020 Hb_012016_020 Hb_003299_090--Hb_012016_020 Hb_110364_010 Hb_110364_010 Hb_001307_140--Hb_110364_010 Hb_063047_010 Hb_063047_010 Hb_001307_140--Hb_063047_010 Hb_001040_160 Hb_001040_160 Hb_001307_140--Hb_001040_160 Hb_000568_040 Hb_000568_040 Hb_001307_140--Hb_000568_040 Hb_001307_140--Hb_000453_270 Hb_001943_010 Hb_001943_010 Hb_001307_140--Hb_001943_010 Hb_001771_130 Hb_001771_130 Hb_003073_210--Hb_001771_130 Hb_000041_220 Hb_000041_220 Hb_003073_210--Hb_000041_220 Hb_003073_210--Hb_003299_090 Hb_001584_170 Hb_001584_170 Hb_003073_210--Hb_001584_170 Hb_005839_120 Hb_005839_120 Hb_003073_210--Hb_005839_120 Hb_171788_010 Hb_171788_010 Hb_139859_010--Hb_171788_010 Hb_139859_010--Hb_003299_090 Hb_139859_010--Hb_005914_090 Hb_000453_080 Hb_000453_080 Hb_139859_010--Hb_000453_080 Hb_006455_080 Hb_006455_080 Hb_139859_010--Hb_006455_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.81874 5.93279 0.449817 0.990306 4.24629 14.1369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.40717 2.69867 4.09238 2.10696 0.62788

CAGE analysis