Hb_000270_030

Information

Type transcription factor
Description TF Family: HB
Location Contig270: 22020-24440
Sequence    

Annotation

kegg
ID pop:POPTR_0015s07640g
description POPTRDRAFT_807937; hypothetical protein
nr
ID XP_002321530.2
description hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
swissprot
ID Q02283
description Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1
trembl
ID A9PHH0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s07640g PE=2 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein hat5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28154: 22228-24424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_030 0.0 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
2 Hb_003943_010 0.0898782214 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001946_340 0.0900424014 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
4 Hb_006520_040 0.0915449604 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
5 Hb_002864_010 0.0933612558 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
6 Hb_013399_070 0.0943762549 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
7 Hb_021374_010 0.0968357605 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
8 Hb_009193_120 0.0971207105 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
9 Hb_000062_020 0.0979450322 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_004648_050 0.0986512421 - - ring finger protein, putative [Ricinus communis]
11 Hb_000213_120 0.0990602741 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_000170_150 0.1013693174 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
13 Hb_004327_040 0.101964289 - - PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]
14 Hb_079326_020 0.1021618028 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002026_210 0.1022305427 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
16 Hb_002960_080 0.1045998404 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
17 Hb_008103_020 0.1049385482 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
18 Hb_011849_040 0.1051749027 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_006373_010 0.105977338 - - Potassium transporter 11 [Gossypium arboreum]
20 Hb_028512_020 0.1060019434 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_030 Hb_000270_030 Hb_003943_010 Hb_003943_010 Hb_000270_030--Hb_003943_010 Hb_001946_340 Hb_001946_340 Hb_000270_030--Hb_001946_340 Hb_006520_040 Hb_006520_040 Hb_000270_030--Hb_006520_040 Hb_002864_010 Hb_002864_010 Hb_000270_030--Hb_002864_010 Hb_013399_070 Hb_013399_070 Hb_000270_030--Hb_013399_070 Hb_021374_010 Hb_021374_010 Hb_000270_030--Hb_021374_010 Hb_001377_160 Hb_001377_160 Hb_003943_010--Hb_001377_160 Hb_003943_010--Hb_001946_340 Hb_000227_220 Hb_000227_220 Hb_003943_010--Hb_000227_220 Hb_000398_080 Hb_000398_080 Hb_003943_010--Hb_000398_080 Hb_000879_040 Hb_000879_040 Hb_003943_010--Hb_000879_040 Hb_159558_010 Hb_159558_010 Hb_003943_010--Hb_159558_010 Hb_007123_030 Hb_007123_030 Hb_001946_340--Hb_007123_030 Hb_007747_040 Hb_007747_040 Hb_001946_340--Hb_007747_040 Hb_004935_030 Hb_004935_030 Hb_001946_340--Hb_004935_030 Hb_001767_140 Hb_001767_140 Hb_001946_340--Hb_001767_140 Hb_001946_340--Hb_001377_160 Hb_001225_040 Hb_001225_040 Hb_006520_040--Hb_001225_040 Hb_000981_030 Hb_000981_030 Hb_006520_040--Hb_000981_030 Hb_000920_300 Hb_000920_300 Hb_006520_040--Hb_000920_300 Hb_002026_210 Hb_002026_210 Hb_006520_040--Hb_002026_210 Hb_003517_040 Hb_003517_040 Hb_006520_040--Hb_003517_040 Hb_003913_070 Hb_003913_070 Hb_006520_040--Hb_003913_070 Hb_000264_030 Hb_000264_030 Hb_002864_010--Hb_000264_030 Hb_001080_230 Hb_001080_230 Hb_002864_010--Hb_001080_230 Hb_027472_050 Hb_027472_050 Hb_002864_010--Hb_027472_050 Hb_000170_150 Hb_000170_150 Hb_002864_010--Hb_000170_150 Hb_000003_190 Hb_000003_190 Hb_002864_010--Hb_000003_190 Hb_002864_010--Hb_013399_070 Hb_013399_070--Hb_000170_150 Hb_003768_050 Hb_003768_050 Hb_013399_070--Hb_003768_050 Hb_013399_070--Hb_001946_340 Hb_000069_470 Hb_000069_470 Hb_013399_070--Hb_000069_470 Hb_001821_090 Hb_001821_090 Hb_013399_070--Hb_001821_090 Hb_000579_230 Hb_000579_230 Hb_013399_070--Hb_000579_230 Hb_004020_040 Hb_004020_040 Hb_021374_010--Hb_004020_040 Hb_021374_010--Hb_000227_220 Hb_000170_090 Hb_000170_090 Hb_021374_010--Hb_000170_090 Hb_021374_010--Hb_003943_010 Hb_001377_310 Hb_001377_310 Hb_021374_010--Hb_001377_310 Hb_001089_030 Hb_001089_030 Hb_021374_010--Hb_001089_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8582 45.4628 16.9787 36.0232 21.7567 47.2443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9098 24.4618 11.7984 29.4554 32.4559

CAGE analysis