Hb_000270_040

Information

Type -
Description -
Location Contig270: 28588-30868
Sequence    

Annotation

kegg
ID rcu:RCOM_1513660
description hypothetical protein
nr
ID XP_002511517.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R942
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1513660 PE=4 SV=1
Gene Ontology
ID GO:0008152
description integral membrane hpp family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28156: 28748-29092 , PASA_asmbl_28157: 29632-30860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004855_030 0.083708109 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_000083_010 0.0867019524 - - -
4 Hb_052139_010 0.0887149992 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
5 Hb_003208_010 0.0975642001 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
6 Hb_000977_260 0.0979608082 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
7 Hb_101097_010 0.098070312 - - polyprotein [Citrus endogenous pararetrovirus]
8 Hb_000282_100 0.098145565 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
9 Hb_000398_110 0.0988065704 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
10 Hb_000349_150 0.1016579075 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
11 Hb_003251_010 0.1020901151 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
12 Hb_006133_010 0.1027927038 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
13 Hb_002041_020 0.1028596205 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
14 Hb_004150_020 0.102865774 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
15 Hb_000282_110 0.1030097473 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
16 Hb_000000_090 0.10305847 - - conserved hypothetical protein [Ricinus communis]
17 Hb_027751_070 0.103693572 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
18 Hb_013818_020 0.1037882024 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
19 Hb_005029_030 0.1052291658 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
20 Hb_001951_040 0.1055834696 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_040 Hb_000270_040 Hb_004855_030 Hb_004855_030 Hb_000270_040--Hb_004855_030 Hb_000083_010 Hb_000083_010 Hb_000270_040--Hb_000083_010 Hb_052139_010 Hb_052139_010 Hb_000270_040--Hb_052139_010 Hb_003208_010 Hb_003208_010 Hb_000270_040--Hb_003208_010 Hb_000977_260 Hb_000977_260 Hb_000270_040--Hb_000977_260 Hb_101097_010 Hb_101097_010 Hb_000270_040--Hb_101097_010 Hb_000349_150 Hb_000349_150 Hb_004855_030--Hb_000349_150 Hb_020805_090 Hb_020805_090 Hb_004855_030--Hb_020805_090 Hb_003251_010 Hb_003251_010 Hb_004855_030--Hb_003251_010 Hb_004855_030--Hb_000977_260 Hb_004855_030--Hb_003208_010 Hb_000893_040 Hb_000893_040 Hb_004855_030--Hb_000893_040 Hb_027751_070 Hb_027751_070 Hb_000083_010--Hb_027751_070 Hb_000398_110 Hb_000398_110 Hb_000083_010--Hb_000398_110 Hb_000083_010--Hb_000977_260 Hb_001210_110 Hb_001210_110 Hb_000083_010--Hb_001210_110 Hb_000083_010--Hb_003208_010 Hb_020859_010 Hb_020859_010 Hb_000083_010--Hb_020859_010 Hb_001856_290 Hb_001856_290 Hb_052139_010--Hb_001856_290 Hb_031194_020 Hb_031194_020 Hb_052139_010--Hb_031194_020 Hb_007101_090 Hb_007101_090 Hb_052139_010--Hb_007101_090 Hb_001001_130 Hb_001001_130 Hb_052139_010--Hb_001001_130 Hb_000645_270 Hb_000645_270 Hb_052139_010--Hb_000645_270 Hb_000000_090 Hb_000000_090 Hb_052139_010--Hb_000000_090 Hb_003208_010--Hb_003251_010 Hb_003208_010--Hb_000977_260 Hb_000282_110 Hb_000282_110 Hb_003208_010--Hb_000282_110 Hb_003208_010--Hb_000398_110 Hb_013818_020 Hb_013818_020 Hb_003208_010--Hb_013818_020 Hb_003208_010--Hb_000893_040 Hb_000977_260--Hb_003251_010 Hb_000977_260--Hb_000893_040 Hb_000977_260--Hb_000398_110 Hb_008489_030 Hb_008489_030 Hb_000977_260--Hb_008489_030 Hb_000977_260--Hb_020859_010 Hb_004807_040 Hb_004807_040 Hb_101097_010--Hb_004807_040 Hb_013405_240 Hb_013405_240 Hb_101097_010--Hb_013405_240 Hb_007416_250 Hb_007416_250 Hb_101097_010--Hb_007416_250 Hb_000530_060 Hb_000530_060 Hb_101097_010--Hb_000530_060 Hb_000029_150 Hb_000029_150 Hb_101097_010--Hb_000029_150 Hb_158597_010 Hb_158597_010 Hb_101097_010--Hb_158597_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.453487 0.167232 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0612091 2.74564

CAGE analysis