Hb_000270_100

Information

Type -
Description -
Location Contig270: 66894-74354
Sequence    

Annotation

kegg
ID pop:POPTR_0012s07350g
description POPTRDRAFT_422528; putative plasma membrane H+ ATPase family protein
nr
ID KHG12451.1
description ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
swissprot
ID Q9SU58
description ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=2 SV=2
trembl
ID A0A0B0NMZ9
description ATPase 4, plasma membrane-type-like protein OS=Gossypium arboreum GN=F383_16606 PE=4 SV=1
Gene Ontology
ID GO:0016021
description atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28162: 66855-74270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_100 0.0 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
2 Hb_001357_050 0.1265043328 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Jatropha curcas]
3 Hb_000347_100 0.1382587932 transcription factor TF Family: C3H hypothetical protein RCOM_0684740 [Ricinus communis]
4 Hb_005839_090 0.1397694556 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g56230 isoform X1 [Populus euphratica]
5 Hb_041692_010 0.1451198241 - - annexin [Manihot esculenta]
6 Hb_007811_020 0.1474960136 - - PREDICTED: expansin-A6 [Jatropha curcas]
7 Hb_001186_100 0.1498499718 - - PREDICTED: uncharacterized protein LOC105640806 isoform X1 [Jatropha curcas]
8 Hb_168918_010 0.1519379377 - - pectin acetylesterase, putative [Ricinus communis]
9 Hb_064546_010 0.1545779476 - - PREDICTED: peroxidase 3 [Jatropha curcas]
10 Hb_005976_110 0.157549281 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
11 Hb_001514_030 0.1592615392 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
12 Hb_004435_020 0.1593949348 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
13 Hb_007617_010 0.1596410028 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
14 Hb_003580_050 0.1610745524 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
15 Hb_116647_010 0.1617826281 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001080_190 0.1624808494 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
17 Hb_001517_070 0.1632020648 - - protein with unknown function [Ricinus communis]
18 Hb_000996_030 0.1633374513 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
19 Hb_000748_120 0.1638241851 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
20 Hb_000951_150 0.1644717176 - - hypothetical protein POPTR_0015s05850g [Populus trichocarpa]

Gene co-expression network

sample Hb_000270_100 Hb_000270_100 Hb_001357_050 Hb_001357_050 Hb_000270_100--Hb_001357_050 Hb_000347_100 Hb_000347_100 Hb_000270_100--Hb_000347_100 Hb_005839_090 Hb_005839_090 Hb_000270_100--Hb_005839_090 Hb_041692_010 Hb_041692_010 Hb_000270_100--Hb_041692_010 Hb_007811_020 Hb_007811_020 Hb_000270_100--Hb_007811_020 Hb_001186_100 Hb_001186_100 Hb_000270_100--Hb_001186_100 Hb_004218_200 Hb_004218_200 Hb_001357_050--Hb_004218_200 Hb_064546_010 Hb_064546_010 Hb_001357_050--Hb_064546_010 Hb_000417_050 Hb_000417_050 Hb_001357_050--Hb_000417_050 Hb_003580_050 Hb_003580_050 Hb_001357_050--Hb_003580_050 Hb_004696_010 Hb_004696_010 Hb_001357_050--Hb_004696_010 Hb_000012_330 Hb_000012_330 Hb_001357_050--Hb_000012_330 Hb_009767_060 Hb_009767_060 Hb_000347_100--Hb_009767_060 Hb_000347_100--Hb_003580_050 Hb_116647_010 Hb_116647_010 Hb_000347_100--Hb_116647_010 Hb_000347_100--Hb_041692_010 Hb_000416_090 Hb_000416_090 Hb_000347_100--Hb_000416_090 Hb_029639_030 Hb_029639_030 Hb_000347_100--Hb_029639_030 Hb_006816_250 Hb_006816_250 Hb_005839_090--Hb_006816_250 Hb_000032_610 Hb_000032_610 Hb_005839_090--Hb_000032_610 Hb_000926_040 Hb_000926_040 Hb_005839_090--Hb_000926_040 Hb_002636_060 Hb_002636_060 Hb_005839_090--Hb_002636_060 Hb_005839_090--Hb_000347_100 Hb_000748_120 Hb_000748_120 Hb_041692_010--Hb_000748_120 Hb_051663_010 Hb_051663_010 Hb_041692_010--Hb_051663_010 Hb_001516_010 Hb_001516_010 Hb_041692_010--Hb_001516_010 Hb_001541_130 Hb_001541_130 Hb_041692_010--Hb_001541_130 Hb_008725_090 Hb_008725_090 Hb_041692_010--Hb_008725_090 Hb_004435_020 Hb_004435_020 Hb_007811_020--Hb_004435_020 Hb_001544_090 Hb_001544_090 Hb_007811_020--Hb_001544_090 Hb_007218_040 Hb_007218_040 Hb_007811_020--Hb_007218_040 Hb_000878_050 Hb_000878_050 Hb_007811_020--Hb_000878_050 Hb_000392_110 Hb_000392_110 Hb_007811_020--Hb_000392_110 Hb_007811_020--Hb_001541_130 Hb_005976_110 Hb_005976_110 Hb_001186_100--Hb_005976_110 Hb_005496_040 Hb_005496_040 Hb_001186_100--Hb_005496_040 Hb_000342_040 Hb_000342_040 Hb_001186_100--Hb_000342_040 Hb_007617_010 Hb_007617_010 Hb_001186_100--Hb_007617_010 Hb_004117_090 Hb_004117_090 Hb_001186_100--Hb_004117_090 Hb_001186_100--Hb_001544_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.59226 0.682517 18.6413 22.7792 0.0139735 1.17818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.720181 0.283356 0 3.09793 14.6696

CAGE analysis