Hb_000270_110

Information

Type -
Description -
Location Contig270: 84039-89561
Sequence    

Annotation

kegg
ID rcu:RCOM_1513350
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012080192.1
description PREDICTED: calcium-dependent protein kinase 10 [Jatropha curcas]
swissprot
ID Q9M9V8
description Calcium-dependent protein kinase 10 OS=Arabidopsis thaliana GN=CPK10 PE=1 SV=1
trembl
ID A0A067K856
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11569 PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28163: 84000-89428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_110 0.0 - - PREDICTED: calcium-dependent protein kinase 10 [Jatropha curcas]
2 Hb_007031_040 0.0705812516 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
3 Hb_000421_110 0.0825721602 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
4 Hb_001133_090 0.1008978901 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
5 Hb_005649_090 0.1022720116 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
6 Hb_001911_010 0.1025970574 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
7 Hb_000941_080 0.1042497117 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
8 Hb_001561_010 0.1050114379 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
9 Hb_001259_120 0.106835867 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
10 Hb_001259_110 0.1111978515 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
11 Hb_001410_130 0.1117478293 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
12 Hb_000371_060 0.1133712959 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
13 Hb_159295_010 0.1138011801 - - hypothetical protein RCOM_1520720 [Ricinus communis]
14 Hb_001195_350 0.1143530781 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
15 Hb_000111_370 0.1151038857 - - PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
16 Hb_010068_070 0.1152673783 - - calcium-dependent protein kinase, putative [Ricinus communis]
17 Hb_005403_010 0.1175361174 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
18 Hb_009372_020 0.1189592765 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
19 Hb_005496_160 0.1197841991 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
20 Hb_033363_010 0.1199884046 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_110 Hb_000270_110 Hb_007031_040 Hb_007031_040 Hb_000270_110--Hb_007031_040 Hb_000421_110 Hb_000421_110 Hb_000270_110--Hb_000421_110 Hb_001133_090 Hb_001133_090 Hb_000270_110--Hb_001133_090 Hb_005649_090 Hb_005649_090 Hb_000270_110--Hb_005649_090 Hb_001911_010 Hb_001911_010 Hb_000270_110--Hb_001911_010 Hb_000941_080 Hb_000941_080 Hb_000270_110--Hb_000941_080 Hb_007031_040--Hb_000421_110 Hb_007031_040--Hb_001911_010 Hb_007031_040--Hb_001133_090 Hb_159295_010 Hb_159295_010 Hb_007031_040--Hb_159295_010 Hb_001410_130 Hb_001410_130 Hb_007031_040--Hb_001410_130 Hb_000421_110--Hb_001133_090 Hb_000418_050 Hb_000418_050 Hb_000421_110--Hb_000418_050 Hb_000270_700 Hb_000270_700 Hb_000421_110--Hb_000270_700 Hb_000421_110--Hb_001911_010 Hb_004319_050 Hb_004319_050 Hb_000421_110--Hb_004319_050 Hb_001133_090--Hb_000418_050 Hb_005885_030 Hb_005885_030 Hb_001133_090--Hb_005885_030 Hb_001133_090--Hb_000270_700 Hb_010775_010 Hb_010775_010 Hb_001133_090--Hb_010775_010 Hb_004195_120 Hb_004195_120 Hb_005649_090--Hb_004195_120 Hb_000056_300 Hb_000056_300 Hb_005649_090--Hb_000056_300 Hb_001009_090 Hb_001009_090 Hb_005649_090--Hb_001009_090 Hb_002903_140 Hb_002903_140 Hb_005649_090--Hb_002903_140 Hb_003226_110 Hb_003226_110 Hb_005649_090--Hb_003226_110 Hb_030545_030 Hb_030545_030 Hb_005649_090--Hb_030545_030 Hb_001911_010--Hb_159295_010 Hb_002248_120 Hb_002248_120 Hb_001911_010--Hb_002248_120 Hb_001911_010--Hb_001410_130 Hb_005403_010 Hb_005403_010 Hb_001911_010--Hb_005403_010 Hb_000941_080--Hb_001410_130 Hb_006054_030 Hb_006054_030 Hb_000941_080--Hb_006054_030 Hb_000941_080--Hb_001911_010 Hb_000941_080--Hb_001009_090 Hb_002119_090 Hb_002119_090 Hb_000941_080--Hb_002119_090 Hb_000270_230 Hb_000270_230 Hb_000941_080--Hb_000270_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2436 37.2594 21.9157 21.7535 7.73687 9.68333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.00649 2.10641 7.85192 17.4178 11.5668

CAGE analysis