Hb_000270_160

Information

Type -
Description -
Location Contig270: 146545-152422
Sequence    

Annotation

kegg
ID cit:102625351
description uncharacterized LOC102625351
nr
ID XP_006477529.1
description PREDICTED: uncharacterized protein LOC102625351 [Citrus sinensis]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID A0A067K4Y9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11563 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein nuclear fusion defective 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28169: 146561-148743 , PASA_asmbl_28170: 149978-152538 , PASA_asmbl_28171: 150005-152538
cDNA
(Sanger)
(ID:Location)		 038_E14.ab1: 149978-151055

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_160 0.0 - - PREDICTED: uncharacterized protein LOC102625351 [Citrus sinensis]
2 Hb_000031_280 0.1089126607 - - -
3 Hb_000935_090 0.1113630398 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
4 Hb_002681_170 0.1120821974 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
5 Hb_000879_160 0.1124734288 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
6 Hb_000347_270 0.1125770838 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
7 Hb_000139_230 0.1126250238 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
8 Hb_000025_650 0.1129182163 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
9 Hb_000031_290 0.1147130398 - - hypothetical protein POPTR_0006s28540g [Populus trichocarpa]
10 Hb_029904_020 0.1170497978 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
11 Hb_001898_090 0.1181335632 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
12 Hb_000206_120 0.1210046821 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
13 Hb_002249_120 0.1225169643 - - RNA-binding protein, putative [Ricinus communis]
14 Hb_010925_020 0.1228732891 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
15 Hb_001085_250 0.1248536753 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL isoform X2 [Jatropha curcas]
16 Hb_004374_080 0.1271127225 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
17 Hb_001021_220 0.1290908716 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
18 Hb_004701_050 0.1309047436 - - alpha1 family protein [Populus trichocarpa]
19 Hb_002749_110 0.1309373706 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
20 Hb_006445_010 0.1318853046 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_160 Hb_000270_160 Hb_000031_280 Hb_000031_280 Hb_000270_160--Hb_000031_280 Hb_000935_090 Hb_000935_090 Hb_000270_160--Hb_000935_090 Hb_002681_170 Hb_002681_170 Hb_000270_160--Hb_002681_170 Hb_000879_160 Hb_000879_160 Hb_000270_160--Hb_000879_160 Hb_000347_270 Hb_000347_270 Hb_000270_160--Hb_000347_270 Hb_000139_230 Hb_000139_230 Hb_000270_160--Hb_000139_230 Hb_008556_030 Hb_008556_030 Hb_000031_280--Hb_008556_030 Hb_001163_120 Hb_001163_120 Hb_000031_280--Hb_001163_120 Hb_000599_080 Hb_000599_080 Hb_000031_280--Hb_000599_080 Hb_000031_280--Hb_002681_170 Hb_000031_290 Hb_000031_290 Hb_000031_280--Hb_000031_290 Hb_001418_040 Hb_001418_040 Hb_000031_280--Hb_001418_040 Hb_001178_150 Hb_001178_150 Hb_000935_090--Hb_001178_150 Hb_001493_040 Hb_001493_040 Hb_000935_090--Hb_001493_040 Hb_001417_050 Hb_001417_050 Hb_000935_090--Hb_001417_050 Hb_000796_190 Hb_000796_190 Hb_000935_090--Hb_000796_190 Hb_000025_650 Hb_000025_650 Hb_000935_090--Hb_000025_650 Hb_004429_160 Hb_004429_160 Hb_000935_090--Hb_004429_160 Hb_002249_120 Hb_002249_120 Hb_002681_170--Hb_002249_120 Hb_002092_100 Hb_002092_100 Hb_002681_170--Hb_002092_100 Hb_002681_170--Hb_008556_030 Hb_002805_060 Hb_002805_060 Hb_002681_170--Hb_002805_060 Hb_000809_210 Hb_000809_210 Hb_002681_170--Hb_000809_210 Hb_000879_160--Hb_000935_090 Hb_000046_070 Hb_000046_070 Hb_000879_160--Hb_000046_070 Hb_000879_160--Hb_000796_190 Hb_000879_160--Hb_004429_160 Hb_000879_160--Hb_000025_650 Hb_007558_120 Hb_007558_120 Hb_000879_160--Hb_007558_120 Hb_018202_050 Hb_018202_050 Hb_000347_270--Hb_018202_050 Hb_004701_050 Hb_004701_050 Hb_000347_270--Hb_004701_050 Hb_002092_110 Hb_002092_110 Hb_000347_270--Hb_002092_110 Hb_000347_270--Hb_002681_170 Hb_000384_080 Hb_000384_080 Hb_000347_270--Hb_000384_080 Hb_001021_220 Hb_001021_220 Hb_000139_230--Hb_001021_220 Hb_006787_060 Hb_006787_060 Hb_000139_230--Hb_006787_060 Hb_029904_020 Hb_029904_020 Hb_000139_230--Hb_029904_020 Hb_000139_230--Hb_000935_090 Hb_001377_110 Hb_001377_110 Hb_000139_230--Hb_001377_110 Hb_000139_230--Hb_000879_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4769 10.811 8.64704 10.6475 15.8349 19.7138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.44823 3.13751 2.97741 3.51094 14.5583

CAGE analysis