Hb_000270_210

Information

Type -
Description -
Location Contig270: 186632-188339
Sequence    

Annotation

kegg
ID cit:102625619
description transcription initiation factor IIB-2-like
nr
ID XP_012080174.1
description PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
swissprot
ID Q9SS44
description Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1
trembl
ID A0A067K4Y2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11558 PE=4 SV=1
Gene Ontology
ID GO:0003743
description transcription initiation factor iib-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28178: 188217-202778
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_210 0.0 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
2 Hb_005389_110 0.1681947253 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]
3 Hb_000640_150 0.1923963084 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
4 Hb_018344_010 0.197219882 - - PREDICTED: endochitinase 2-like [Populus euphratica]
5 Hb_002232_150 0.2046264078 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
6 Hb_116125_010 0.2120026725 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Citrus sinensis]
7 Hb_002735_040 0.2261459959 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
8 Hb_007846_040 0.2292261551 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
9 Hb_000997_410 0.2465666999 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
10 Hb_001677_050 0.2474770601 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
11 Hb_000003_390 0.2482237886 - - hypothetical protein POPTR_0003s20040g [Populus trichocarpa]
12 Hb_010531_050 0.2511445305 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
13 Hb_002998_050 0.2517729634 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Sesamum indicum]
14 Hb_134894_010 0.2522814138 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
15 Hb_105085_010 0.2526184632 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
16 Hb_084858_010 0.2645925421 - - Uncharacterized protein isoform 3 [Theobroma cacao]
17 Hb_001632_010 0.2655551695 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
18 Hb_000375_370 0.2669555231 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
19 Hb_035662_010 0.2679923744 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002259_040 0.2697364666 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000270_210 Hb_000270_210 Hb_005389_110 Hb_005389_110 Hb_000270_210--Hb_005389_110 Hb_000640_150 Hb_000640_150 Hb_000270_210--Hb_000640_150 Hb_018344_010 Hb_018344_010 Hb_000270_210--Hb_018344_010 Hb_002232_150 Hb_002232_150 Hb_000270_210--Hb_002232_150 Hb_116125_010 Hb_116125_010 Hb_000270_210--Hb_116125_010 Hb_002735_040 Hb_002735_040 Hb_000270_210--Hb_002735_040 Hb_005389_110--Hb_018344_010 Hb_003929_060 Hb_003929_060 Hb_005389_110--Hb_003929_060 Hb_000402_010 Hb_000402_010 Hb_005389_110--Hb_000402_010 Hb_005389_110--Hb_002735_040 Hb_005389_110--Hb_000640_150 Hb_012404_040 Hb_012404_040 Hb_000640_150--Hb_012404_040 Hb_000003_390 Hb_000003_390 Hb_000640_150--Hb_000003_390 Hb_007846_040 Hb_007846_040 Hb_000640_150--Hb_007846_040 Hb_010261_010 Hb_010261_010 Hb_000640_150--Hb_010261_010 Hb_003157_010 Hb_003157_010 Hb_000640_150--Hb_003157_010 Hb_003534_040 Hb_003534_040 Hb_018344_010--Hb_003534_040 Hb_018344_010--Hb_116125_010 Hb_105085_010 Hb_105085_010 Hb_018344_010--Hb_105085_010 Hb_001632_010 Hb_001632_010 Hb_018344_010--Hb_001632_010 Hb_002232_150--Hb_007846_040 Hb_010531_050 Hb_010531_050 Hb_002232_150--Hb_010531_050 Hb_002232_150--Hb_000640_150 Hb_005464_030 Hb_005464_030 Hb_002232_150--Hb_005464_030 Hb_164458_010 Hb_164458_010 Hb_002232_150--Hb_164458_010 Hb_002259_040 Hb_002259_040 Hb_116125_010--Hb_002259_040 Hb_116125_010--Hb_105085_010 Hb_116125_010--Hb_002232_150 Hb_116125_010--Hb_005389_110 Hb_002735_040--Hb_105085_010 Hb_002804_050 Hb_002804_050 Hb_002735_040--Hb_002804_050 Hb_006615_100 Hb_006615_100 Hb_002735_040--Hb_006615_100 Hb_002843_050 Hb_002843_050 Hb_002735_040--Hb_002843_050 Hb_005122_060 Hb_005122_060 Hb_002735_040--Hb_005122_060 Hb_012384_050 Hb_012384_050 Hb_002735_040--Hb_012384_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.38735 0.970988 0.194586 0.328771 0.697764 1.55812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0968908 0 0 1.43424 0

CAGE analysis