Hb_000270_260

Information

Type -
Description -
Location Contig270: 220127-222370
Sequence    

Annotation

kegg
ID fve:101311864
description uncharacterized protein LOC101311864
nr
ID XP_012080172.1
description PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KH81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11555 PE=4 SV=1
Gene Ontology
ID GO:0009507
description trna -lysidine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28181: 219957-220125
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_260 0.0 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
2 Hb_000302_180 0.0772695332 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_082609_010 0.1073171912 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
4 Hb_012022_150 0.1090566949 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
5 Hb_000329_320 0.1107237029 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
6 Hb_111985_050 0.1118681851 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
7 Hb_001322_140 0.1118787985 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
8 Hb_007389_010 0.1123088741 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
9 Hb_002490_020 0.1154039235 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
10 Hb_032264_070 0.1169705706 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
11 Hb_011716_130 0.1174314322 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
12 Hb_008165_060 0.1178130491 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
13 Hb_008173_020 0.1184028367 - - glutathione peroxidase [Populus euphratica]
14 Hb_022693_140 0.1186400527 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
15 Hb_000866_260 0.1193799398 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
16 Hb_000819_080 0.1224447751 - - Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_000815_070 0.1237483574 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
18 Hb_003939_050 0.1239587168 - - protein with unknown function [Ricinus communis]
19 Hb_001700_010 0.1244231954 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
20 Hb_001898_160 0.124742459 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]

Gene co-expression network

sample Hb_000270_260 Hb_000270_260 Hb_000302_180 Hb_000302_180 Hb_000270_260--Hb_000302_180 Hb_082609_010 Hb_082609_010 Hb_000270_260--Hb_082609_010 Hb_012022_150 Hb_012022_150 Hb_000270_260--Hb_012022_150 Hb_000329_320 Hb_000329_320 Hb_000270_260--Hb_000329_320 Hb_111985_050 Hb_111985_050 Hb_000270_260--Hb_111985_050 Hb_001322_140 Hb_001322_140 Hb_000270_260--Hb_001322_140 Hb_000819_080 Hb_000819_080 Hb_000302_180--Hb_000819_080 Hb_003939_050 Hb_003939_050 Hb_000302_180--Hb_003939_050 Hb_022693_140 Hb_022693_140 Hb_000302_180--Hb_022693_140 Hb_000302_180--Hb_000329_320 Hb_000815_070 Hb_000815_070 Hb_000302_180--Hb_000815_070 Hb_027654_060 Hb_027654_060 Hb_082609_010--Hb_027654_060 Hb_000352_270 Hb_000352_270 Hb_082609_010--Hb_000352_270 Hb_000614_220 Hb_000614_220 Hb_082609_010--Hb_000614_220 Hb_003020_220 Hb_003020_220 Hb_082609_010--Hb_003020_220 Hb_001898_160 Hb_001898_160 Hb_082609_010--Hb_001898_160 Hb_103118_010 Hb_103118_010 Hb_082609_010--Hb_103118_010 Hb_012022_150--Hb_022693_140 Hb_000224_160 Hb_000224_160 Hb_012022_150--Hb_000224_160 Hb_002163_040 Hb_002163_040 Hb_012022_150--Hb_002163_040 Hb_003029_070 Hb_003029_070 Hb_012022_150--Hb_003029_070 Hb_000804_040 Hb_000804_040 Hb_012022_150--Hb_000804_040 Hb_000753_240 Hb_000753_240 Hb_012022_150--Hb_000753_240 Hb_032264_070 Hb_032264_070 Hb_000329_320--Hb_032264_070 Hb_005269_070 Hb_005269_070 Hb_000329_320--Hb_005269_070 Hb_002490_020 Hb_002490_020 Hb_000329_320--Hb_002490_020 Hb_000917_060 Hb_000917_060 Hb_000329_320--Hb_000917_060 Hb_000883_020 Hb_000883_020 Hb_000329_320--Hb_000883_020 Hb_000866_260 Hb_000866_260 Hb_000329_320--Hb_000866_260 Hb_017904_010 Hb_017904_010 Hb_111985_050--Hb_017904_010 Hb_007389_010 Hb_007389_010 Hb_111985_050--Hb_007389_010 Hb_003020_020 Hb_003020_020 Hb_111985_050--Hb_003020_020 Hb_009694_010 Hb_009694_010 Hb_111985_050--Hb_009694_010 Hb_001959_070 Hb_001959_070 Hb_111985_050--Hb_001959_070 Hb_004837_030 Hb_004837_030 Hb_111985_050--Hb_004837_030 Hb_001322_140--Hb_000804_040 Hb_001700_010 Hb_001700_010 Hb_001322_140--Hb_001700_010 Hb_001322_140--Hb_012022_150 Hb_000205_190 Hb_000205_190 Hb_001322_140--Hb_000205_190 Hb_000184_170 Hb_000184_170 Hb_001322_140--Hb_000184_170 Hb_001322_140--Hb_000224_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.15478 0.709409 2.13948 0.635999 1.48431 2.14972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.8639 2.86965 2.7326 1.33979 3.15087

CAGE analysis