Hb_000270_270

Information

Type transcription factor
Description TF Family: bHLH
Location Contig270: 226242-229739
Sequence    

Annotation

kegg
ID rcu:RCOM_1512960
description DNA binding protein, putative
nr
ID XP_012075467.1
description PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LV17
description Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1
trembl
ID A0A067KJA7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10940 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh79-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28182: 226323-229568
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_270 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
2 Hb_153112_020 0.068647958 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
3 Hb_000684_090 0.0745853767 transcription factor TF Family: S1Fa-like -
4 Hb_002205_080 0.0746971996 - - 40S ribosomal protein S26, putative [Ricinus communis]
5 Hb_002874_190 0.0809649415 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
6 Hb_004931_090 0.0816100729 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
7 Hb_000331_080 0.0820660505 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
8 Hb_008878_030 0.0827805594 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
9 Hb_007416_030 0.0830934768 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
10 Hb_000608_370 0.0835810661 - - acyl-carrier-protein [Triadica sebifera]
11 Hb_112798_030 0.0835811404 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003050_080 0.0849116373 - - 40S ribosomal protein S14, putative [Ricinus communis]
13 Hb_011867_010 0.0858341707 - - PREDICTED: uncharacterized protein LOC105641409 [Jatropha curcas]
14 Hb_001277_070 0.0863738051 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
15 Hb_004048_110 0.0871538221 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
16 Hb_011224_110 0.0873551839 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
17 Hb_000703_140 0.0877385808 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
18 Hb_000221_220 0.0893224846 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
19 Hb_000454_050 0.0895482503 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
20 Hb_002928_130 0.0898296255 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_270 Hb_000270_270 Hb_153112_020 Hb_153112_020 Hb_000270_270--Hb_153112_020 Hb_000684_090 Hb_000684_090 Hb_000270_270--Hb_000684_090 Hb_002205_080 Hb_002205_080 Hb_000270_270--Hb_002205_080 Hb_002874_190 Hb_002874_190 Hb_000270_270--Hb_002874_190 Hb_004931_090 Hb_004931_090 Hb_000270_270--Hb_004931_090 Hb_000331_080 Hb_000331_080 Hb_000270_270--Hb_000331_080 Hb_153112_020--Hb_000331_080 Hb_000840_030 Hb_000840_030 Hb_153112_020--Hb_000840_030 Hb_004994_100 Hb_004994_100 Hb_153112_020--Hb_004994_100 Hb_011224_110 Hb_011224_110 Hb_153112_020--Hb_011224_110 Hb_003207_190 Hb_003207_190 Hb_153112_020--Hb_003207_190 Hb_009838_080 Hb_009838_080 Hb_153112_020--Hb_009838_080 Hb_001828_090 Hb_001828_090 Hb_000684_090--Hb_001828_090 Hb_001512_070 Hb_001512_070 Hb_000684_090--Hb_001512_070 Hb_007101_150 Hb_007101_150 Hb_000684_090--Hb_007101_150 Hb_000015_080 Hb_000015_080 Hb_000684_090--Hb_000015_080 Hb_011360_140 Hb_011360_140 Hb_000684_090--Hb_011360_140 Hb_001257_080 Hb_001257_080 Hb_002205_080--Hb_001257_080 Hb_001379_060 Hb_001379_060 Hb_002205_080--Hb_001379_060 Hb_002205_080--Hb_007101_150 Hb_002205_080--Hb_001828_090 Hb_003018_200 Hb_003018_200 Hb_002205_080--Hb_003018_200 Hb_003055_120 Hb_003055_120 Hb_002874_190--Hb_003055_120 Hb_005539_350 Hb_005539_350 Hb_002874_190--Hb_005539_350 Hb_165132_010 Hb_165132_010 Hb_002874_190--Hb_165132_010 Hb_003687_110 Hb_003687_110 Hb_002874_190--Hb_003687_110 Hb_006541_030 Hb_006541_030 Hb_002874_190--Hb_006541_030 Hb_002874_190--Hb_000840_030 Hb_000510_110 Hb_000510_110 Hb_004931_090--Hb_000510_110 Hb_004657_050 Hb_004657_050 Hb_004931_090--Hb_004657_050 Hb_004931_090--Hb_165132_010 Hb_004934_110 Hb_004934_110 Hb_004931_090--Hb_004934_110 Hb_002686_020 Hb_002686_020 Hb_004931_090--Hb_002686_020 Hb_001540_010 Hb_001540_010 Hb_004931_090--Hb_001540_010 Hb_000331_080--Hb_004994_100 Hb_008878_030 Hb_008878_030 Hb_000331_080--Hb_008878_030 Hb_000331_080--Hb_000840_030 Hb_000331_080--Hb_002686_020 Hb_012725_050 Hb_012725_050 Hb_000331_080--Hb_012725_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.4387 7.3735 18.52 8.57721 30.8146 23.9103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.5093 50.8899 37.2981 10.2353 9.00082

CAGE analysis