Hb_000270_300

Information

Type -
Description -
Location Contig270: 234163-234453
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_300 0.0 - - -
2 Hb_036790_130 0.1259033412 - - -
3 Hb_002918_060 0.1562082126 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
4 Hb_032202_120 0.1607105382 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
5 Hb_004586_280 0.1625838279 - - PREDICTED: GEM-like protein 1 [Jatropha curcas]
6 Hb_171900_070 0.1681222739 - - -
7 Hb_000317_250 0.1686420123 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
8 Hb_011344_090 0.1686424943 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
9 Hb_000748_080 0.1709882365 - - hypothetical protein OsI_28173 [Oryza sativa Indica Group]
10 Hb_005333_160 0.1722091907 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
11 Hb_004920_010 0.1764473692 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
12 Hb_003125_070 0.1765253387 - - PREDICTED: serine/threonine-protein kinase rio1-like [Jatropha curcas]
13 Hb_000703_210 0.1766346831 - - Inactive protein kinase [Gossypium arboreum]
14 Hb_000086_560 0.1766557704 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
15 Hb_002157_050 0.1768810872 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
16 Hb_000556_100 0.177918445 - - PREDICTED: uncharacterized protein LOC104784782 isoform X2 [Camelina sativa]
17 Hb_032278_020 0.1782542502 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
18 Hb_000059_140 0.178501928 - - rnase h, putative [Ricinus communis]
19 Hb_001025_110 0.17978818 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003097_170 0.1803630099 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_300 Hb_000270_300 Hb_036790_130 Hb_036790_130 Hb_000270_300--Hb_036790_130 Hb_002918_060 Hb_002918_060 Hb_000270_300--Hb_002918_060 Hb_032202_120 Hb_032202_120 Hb_000270_300--Hb_032202_120 Hb_004586_280 Hb_004586_280 Hb_000270_300--Hb_004586_280 Hb_171900_070 Hb_171900_070 Hb_000270_300--Hb_171900_070 Hb_000317_250 Hb_000317_250 Hb_000270_300--Hb_000317_250 Hb_000186_260 Hb_000186_260 Hb_036790_130--Hb_000186_260 Hb_000556_100 Hb_000556_100 Hb_036790_130--Hb_000556_100 Hb_005214_060 Hb_005214_060 Hb_036790_130--Hb_005214_060 Hb_005016_060 Hb_005016_060 Hb_036790_130--Hb_005016_060 Hb_002411_180 Hb_002411_180 Hb_036790_130--Hb_002411_180 Hb_000059_140 Hb_000059_140 Hb_002918_060--Hb_000059_140 Hb_005892_030 Hb_005892_030 Hb_002918_060--Hb_005892_030 Hb_140049_030 Hb_140049_030 Hb_002918_060--Hb_140049_030 Hb_002422_050 Hb_002422_050 Hb_002918_060--Hb_002422_050 Hb_001427_190 Hb_001427_190 Hb_002918_060--Hb_001427_190 Hb_002045_150 Hb_002045_150 Hb_002918_060--Hb_002045_150 Hb_008103_070 Hb_008103_070 Hb_032202_120--Hb_008103_070 Hb_001433_070 Hb_001433_070 Hb_032202_120--Hb_001433_070 Hb_005289_040 Hb_005289_040 Hb_032202_120--Hb_005289_040 Hb_012753_170 Hb_012753_170 Hb_032202_120--Hb_012753_170 Hb_002890_120 Hb_002890_120 Hb_032202_120--Hb_002890_120 Hb_005588_090 Hb_005588_090 Hb_032202_120--Hb_005588_090 Hb_167234_010 Hb_167234_010 Hb_004586_280--Hb_167234_010 Hb_004994_090 Hb_004994_090 Hb_004586_280--Hb_004994_090 Hb_001235_140 Hb_001235_140 Hb_004586_280--Hb_001235_140 Hb_162150_010 Hb_162150_010 Hb_004586_280--Hb_162150_010 Hb_000213_120 Hb_000213_120 Hb_004586_280--Hb_000213_120 Hb_003097_170 Hb_003097_170 Hb_004586_280--Hb_003097_170 Hb_005333_160 Hb_005333_160 Hb_171900_070--Hb_005333_160 Hb_000359_120 Hb_000359_120 Hb_171900_070--Hb_000359_120 Hb_171900_070--Hb_005289_040 Hb_000086_560 Hb_000086_560 Hb_171900_070--Hb_000086_560 Hb_171900_070--Hb_032202_120 Hb_011689_060 Hb_011689_060 Hb_171900_070--Hb_011689_060 Hb_001541_080 Hb_001541_080 Hb_000317_250--Hb_001541_080 Hb_001143_110 Hb_001143_110 Hb_000317_250--Hb_001143_110 Hb_033834_060 Hb_033834_060 Hb_000317_250--Hb_033834_060 Hb_000333_060 Hb_000333_060 Hb_000317_250--Hb_000333_060 Hb_004689_050 Hb_004689_050 Hb_000317_250--Hb_004689_050 Hb_003464_020 Hb_003464_020 Hb_000317_250--Hb_003464_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.60932 2.70154 3.44629 1.73689 4.28278 6.11882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.23784 2.23339 0 5.19759 1.45121

CAGE analysis