Hb_000270_320

Information

Type -
Description -
Location Contig270: 240350-243760
Sequence    

Annotation

kegg
ID rcu:RCOM_1512920
description hypothetical protein
nr
ID XP_002511483.1
description hypothetical protein RCOM_1512920 [Ricinus communis]
swissprot
ID F4HVS6
description Probable myosin-binding protein 6 OS=Arabidopsis thaliana GN=MYOB6 PE=2 SV=1
trembl
ID B9R908
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1512920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_320 0.0 - - hypothetical protein RCOM_1512920 [Ricinus communis]
2 Hb_001488_100 0.1480060631 - - -
3 Hb_000340_430 0.1527398996 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000329_600 0.1528976936 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
5 Hb_001999_060 0.1645721604 - - hypothetical protein POPTR_0009s05000g [Populus trichocarpa]
6 Hb_002301_320 0.1681468425 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
7 Hb_011909_040 0.1705113056 - - hypothetical protein JCGZ_00750 [Jatropha curcas]
8 Hb_004306_070 0.1717094711 - - hypothetical protein 0_18789_01, partial [Pinus taeda]
9 Hb_180992_010 0.175282688 - - hypothetical protein POPTR_0010s24060g [Populus trichocarpa]
10 Hb_001191_100 0.1805930156 - - F-actin capping protein beta subunit [Populus trichocarpa]
11 Hb_004453_140 0.1816294541 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
12 Hb_007760_030 0.18268603 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
13 Hb_000032_260 0.1834633443 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
14 Hb_001606_070 0.1837404435 - - fimbrin, putative [Ricinus communis]
15 Hb_000427_110 0.1862407912 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
16 Hb_000111_280 0.1881363973 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
17 Hb_002835_170 0.1881909779 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
18 Hb_005000_290 0.1894216731 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
19 Hb_000252_040 0.1900308818 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]
20 Hb_005867_040 0.190946613 transcription factor TF Family: RWP-RK PREDICTED: protein RKD4 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_320 Hb_000270_320 Hb_001488_100 Hb_001488_100 Hb_000270_320--Hb_001488_100 Hb_000340_430 Hb_000340_430 Hb_000270_320--Hb_000340_430 Hb_000329_600 Hb_000329_600 Hb_000270_320--Hb_000329_600 Hb_001999_060 Hb_001999_060 Hb_000270_320--Hb_001999_060 Hb_002301_320 Hb_002301_320 Hb_000270_320--Hb_002301_320 Hb_011909_040 Hb_011909_040 Hb_000270_320--Hb_011909_040 Hb_001488_100--Hb_002301_320 Hb_003497_030 Hb_003497_030 Hb_001488_100--Hb_003497_030 Hb_002835_170 Hb_002835_170 Hb_001488_100--Hb_002835_170 Hb_011457_170 Hb_011457_170 Hb_001488_100--Hb_011457_170 Hb_001606_070 Hb_001606_070 Hb_001488_100--Hb_001606_070 Hb_001488_100--Hb_000340_430 Hb_102864_010 Hb_102864_010 Hb_000340_430--Hb_102864_010 Hb_000599_090 Hb_000599_090 Hb_000340_430--Hb_000599_090 Hb_001191_100 Hb_001191_100 Hb_000340_430--Hb_001191_100 Hb_002307_090 Hb_002307_090 Hb_000340_430--Hb_002307_090 Hb_000111_280 Hb_000111_280 Hb_000340_430--Hb_000111_280 Hb_005000_290 Hb_005000_290 Hb_000329_600--Hb_005000_290 Hb_015934_020 Hb_015934_020 Hb_000329_600--Hb_015934_020 Hb_001396_220 Hb_001396_220 Hb_000329_600--Hb_001396_220 Hb_004453_140 Hb_004453_140 Hb_000329_600--Hb_004453_140 Hb_000427_110 Hb_000427_110 Hb_000329_600--Hb_000427_110 Hb_002374_460 Hb_002374_460 Hb_000329_600--Hb_002374_460 Hb_002357_040 Hb_002357_040 Hb_001999_060--Hb_002357_040 Hb_002038_060 Hb_002038_060 Hb_001999_060--Hb_002038_060 Hb_003638_030 Hb_003638_030 Hb_001999_060--Hb_003638_030 Hb_026048_100 Hb_026048_100 Hb_001999_060--Hb_026048_100 Hb_000025_480 Hb_000025_480 Hb_001999_060--Hb_000025_480 Hb_103873_010 Hb_103873_010 Hb_001999_060--Hb_103873_010 Hb_002301_320--Hb_002835_170 Hb_000571_070 Hb_000571_070 Hb_002301_320--Hb_000571_070 Hb_002301_320--Hb_103873_010 Hb_002248_050 Hb_002248_050 Hb_002301_320--Hb_002248_050 Hb_003001_030 Hb_003001_030 Hb_002301_320--Hb_003001_030 Hb_011909_040--Hb_001488_100 Hb_011909_040--Hb_000340_430 Hb_002007_270 Hb_002007_270 Hb_011909_040--Hb_002007_270 Hb_011909_040--Hb_001999_060 Hb_000789_190 Hb_000789_190 Hb_011909_040--Hb_000789_190 Hb_000193_250 Hb_000193_250 Hb_011909_040--Hb_000193_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0601757 0 0.0163042 0 0.0645311 0.0811514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0499275 0.0982075 0.111452 0.0234642 0

CAGE analysis