Hb_000270_370

Information

Type -
Description -
Location Contig270: 281652-283909
Sequence    

Annotation

kegg
ID tcc:TCM_011954
description hypothetical protein
nr
ID XP_007036060.1
description Uncharacterized protein TCM_011954 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FTN8
description Uncharacterized protein OS=Theobroma cacao GN=TCM_011954 PE=4 SV=1
Gene Ontology
ID GO:0016021
description af385728_1at3g47831 t23j7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28201: 281793-283944 , PASA_asmbl_28203: 282979-283322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_370 0.0 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
2 Hb_027073_040 0.065810134 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
3 Hb_000221_160 0.0682757908 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
4 Hb_000373_120 0.0693864892 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
5 Hb_000979_230 0.0703418588 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
6 Hb_000671_090 0.0739318135 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
7 Hb_033834_040 0.0741652488 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002759_060 0.0747950154 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
9 Hb_004375_100 0.0759514105 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
10 Hb_012053_070 0.0781503636 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
11 Hb_000574_480 0.0786041364 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
12 Hb_006816_530 0.0811185384 - - 60S ribosomal protein L18, putative [Ricinus communis]
13 Hb_002061_040 0.0819574129 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
14 Hb_001421_060 0.0820821195 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
15 Hb_001814_050 0.0820833411 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_001833_110 0.0841740368 - - conserved hypothetical protein [Ricinus communis]
17 Hb_159809_020 0.0845768588 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_001584_190 0.0851685398 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
19 Hb_012675_060 0.0852381459 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
20 Hb_000103_090 0.0857324202 - - PREDICTED: protein RDM1 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_370 Hb_000270_370 Hb_027073_040 Hb_027073_040 Hb_000270_370--Hb_027073_040 Hb_000221_160 Hb_000221_160 Hb_000270_370--Hb_000221_160 Hb_000373_120 Hb_000373_120 Hb_000270_370--Hb_000373_120 Hb_000979_230 Hb_000979_230 Hb_000270_370--Hb_000979_230 Hb_000671_090 Hb_000671_090 Hb_000270_370--Hb_000671_090 Hb_033834_040 Hb_033834_040 Hb_000270_370--Hb_033834_040 Hb_002759_060 Hb_002759_060 Hb_027073_040--Hb_002759_060 Hb_027073_040--Hb_033834_040 Hb_000028_140 Hb_000028_140 Hb_027073_040--Hb_000028_140 Hb_000058_060 Hb_000058_060 Hb_027073_040--Hb_000058_060 Hb_000696_310 Hb_000696_310 Hb_027073_040--Hb_000696_310 Hb_003918_010 Hb_003918_010 Hb_000221_160--Hb_003918_010 Hb_012053_070 Hb_012053_070 Hb_000221_160--Hb_012053_070 Hb_000363_360 Hb_000363_360 Hb_000221_160--Hb_000363_360 Hb_000331_200 Hb_000331_200 Hb_000221_160--Hb_000331_200 Hb_033594_150 Hb_033594_150 Hb_000221_160--Hb_033594_150 Hb_001421_060 Hb_001421_060 Hb_000373_120--Hb_001421_060 Hb_000479_090 Hb_000479_090 Hb_000373_120--Hb_000479_090 Hb_000059_370 Hb_000059_370 Hb_000373_120--Hb_000059_370 Hb_010068_020 Hb_010068_020 Hb_000373_120--Hb_010068_020 Hb_004375_100 Hb_004375_100 Hb_000373_120--Hb_004375_100 Hb_000239_010 Hb_000239_010 Hb_000979_230--Hb_000239_010 Hb_000979_230--Hb_000671_090 Hb_001691_210 Hb_001691_210 Hb_000979_230--Hb_001691_210 Hb_001109_020 Hb_001109_020 Hb_000979_230--Hb_001109_020 Hb_009666_040 Hb_009666_040 Hb_000979_230--Hb_009666_040 Hb_000009_160 Hb_000009_160 Hb_000671_090--Hb_000009_160 Hb_007479_020 Hb_007479_020 Hb_000671_090--Hb_007479_020 Hb_158467_010 Hb_158467_010 Hb_000671_090--Hb_158467_010 Hb_000834_270 Hb_000834_270 Hb_000671_090--Hb_000834_270 Hb_002226_070 Hb_002226_070 Hb_033834_040--Hb_002226_070 Hb_000103_090 Hb_000103_090 Hb_033834_040--Hb_000103_090 Hb_000926_250 Hb_000926_250 Hb_033834_040--Hb_000926_250 Hb_004032_010 Hb_004032_010 Hb_033834_040--Hb_004032_010 Hb_002183_090 Hb_002183_090 Hb_033834_040--Hb_002183_090 Hb_159809_020 Hb_159809_020 Hb_033834_040--Hb_159809_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.5049 9.79593 13.7655 27.6257 25.8049 32.8936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.4259 65.2226 43.6185 33.8188 14.4089

CAGE analysis