Hb_000270_380

Information

Type -
Description -
Location Contig270: 285754-290715
Sequence    

Annotation

kegg
ID rcu:RCOM_1512840
description Microtubule-associated protein TORTIFOLIA1, putative
nr
ID XP_012080157.1
description PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
swissprot
ID Q9T041
description Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2
trembl
ID A0A067KFY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11541 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28205: 285799-290423 , PASA_asmbl_28206: 286403-286699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_380 0.0 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
2 Hb_009023_010 0.062716682 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
3 Hb_012098_160 0.0659100369 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
4 Hb_001486_280 0.0730661241 - - hypothetical protein RCOM_1321910 [Ricinus communis]
5 Hb_015561_010 0.0749061995 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001512_130 0.0831095842 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
7 Hb_000336_290 0.0856654892 - - leucine-rich repeat protein, putative [Ricinus communis]
8 Hb_000904_120 0.087789247 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000031_180 0.0888555786 - - sarcosine oxidase, putative [Ricinus communis]
10 Hb_002062_010 0.0903535478 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
11 Hb_005762_010 0.0936830884 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
12 Hb_003032_030 0.0951685825 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
13 Hb_007163_100 0.0953298147 - - BnaC03g52280D [Brassica napus]
14 Hb_005694_160 0.096751754 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001699_080 0.0972736276 - - unnamed protein product [Coffea canephora]
16 Hb_000345_550 0.0989336757 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
17 Hb_002119_100 0.1032851519 - - cytochrome B561, putative [Ricinus communis]
18 Hb_012484_050 0.1035213516 - - PREDICTED: kinesin KP1 [Jatropha curcas]
19 Hb_005295_020 0.1039640175 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
20 Hb_003417_050 0.1042505818 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000270_380 Hb_000270_380 Hb_009023_010 Hb_009023_010 Hb_000270_380--Hb_009023_010 Hb_012098_160 Hb_012098_160 Hb_000270_380--Hb_012098_160 Hb_001486_280 Hb_001486_280 Hb_000270_380--Hb_001486_280 Hb_015561_010 Hb_015561_010 Hb_000270_380--Hb_015561_010 Hb_001512_130 Hb_001512_130 Hb_000270_380--Hb_001512_130 Hb_000336_290 Hb_000336_290 Hb_000270_380--Hb_000336_290 Hb_009023_010--Hb_015561_010 Hb_005762_010 Hb_005762_010 Hb_009023_010--Hb_005762_010 Hb_002062_010 Hb_002062_010 Hb_009023_010--Hb_002062_010 Hb_009023_010--Hb_012098_160 Hb_009023_010--Hb_001512_130 Hb_007163_100 Hb_007163_100 Hb_012098_160--Hb_007163_100 Hb_012098_160--Hb_001486_280 Hb_000904_120 Hb_000904_120 Hb_012098_160--Hb_000904_120 Hb_012098_160--Hb_015561_010 Hb_001486_280--Hb_009023_010 Hb_002485_010 Hb_002485_010 Hb_001486_280--Hb_002485_010 Hb_001486_280--Hb_000904_120 Hb_012484_050 Hb_012484_050 Hb_001486_280--Hb_012484_050 Hb_015561_010--Hb_002062_010 Hb_015561_010--Hb_001512_130 Hb_002119_100 Hb_002119_100 Hb_015561_010--Hb_002119_100 Hb_003417_050 Hb_003417_050 Hb_015561_010--Hb_003417_050 Hb_007483_090 Hb_007483_090 Hb_015561_010--Hb_007483_090 Hb_001512_130--Hb_002062_010 Hb_000017_180 Hb_000017_180 Hb_001512_130--Hb_000017_180 Hb_136408_040 Hb_136408_040 Hb_001512_130--Hb_136408_040 Hb_005656_120 Hb_005656_120 Hb_001512_130--Hb_005656_120 Hb_000500_240 Hb_000500_240 Hb_000336_290--Hb_000500_240 Hb_000031_180 Hb_000031_180 Hb_000336_290--Hb_000031_180 Hb_000599_150 Hb_000599_150 Hb_000336_290--Hb_000599_150 Hb_005694_160 Hb_005694_160 Hb_000336_290--Hb_005694_160 Hb_000329_440 Hb_000329_440 Hb_000336_290--Hb_000329_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.487135 5.99728 24.084 46.9586 0.862662 0.158057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0517031 0.0271232 0.362118 0.985356 38.9649

CAGE analysis