Hb_000270_400

Information

Type -
Description -
Location Contig270: 301838-304849
Sequence    

Annotation

kegg
ID rcu:RCOM_1512820
description lipase, putative
nr
ID XP_002511473.1
description lipase, putative [Ricinus communis]
swissprot
ID Q9XF23
description Protein EDS1L OS=Arabidopsis thaliana GN=EDS1 PE=1 SV=1
trembl
ID B9R8Z8
description Lipase, putative OS=Ricinus communis GN=RCOM_1512820 PE=4 SV=1
Gene Ontology
ID GO:0016787
description enhanced disease susceptibility 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28212: 301802-304714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_400 0.0 - - lipase, putative [Ricinus communis]
2 Hb_000523_020 0.0748426909 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
3 Hb_007545_210 0.0995541376 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
4 Hb_126669_010 0.10158476 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]
5 Hb_004254_040 0.1025278898 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
6 Hb_000172_610 0.1080464326 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
7 Hb_002627_060 0.1123692709 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
8 Hb_003636_090 0.1159660699 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
9 Hb_001780_060 0.1167876911 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
10 Hb_002388_060 0.118142625 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000603_200 0.1186614939 - - PREDICTED: myosin-15 [Jatropha curcas]
12 Hb_170116_010 0.1197492208 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
13 Hb_000928_230 0.1252699379 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000376_150 0.1286789567 - - O-acyltransferase WSD1 [Gossypium arboreum]
15 Hb_001454_390 0.1312225743 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
16 Hb_002078_430 0.131272974 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
17 Hb_004738_090 0.1325805571 - - conserved hypothetical protein [Ricinus communis]
18 Hb_098315_100 0.1359006358 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
19 Hb_001635_220 0.1363358909 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
20 Hb_000416_100 0.1376375383 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_400 Hb_000270_400 Hb_000523_020 Hb_000523_020 Hb_000270_400--Hb_000523_020 Hb_007545_210 Hb_007545_210 Hb_000270_400--Hb_007545_210 Hb_126669_010 Hb_126669_010 Hb_000270_400--Hb_126669_010 Hb_004254_040 Hb_004254_040 Hb_000270_400--Hb_004254_040 Hb_000172_610 Hb_000172_610 Hb_000270_400--Hb_000172_610 Hb_002627_060 Hb_002627_060 Hb_000270_400--Hb_002627_060 Hb_000523_020--Hb_126669_010 Hb_000523_020--Hb_007545_210 Hb_002388_060 Hb_002388_060 Hb_000523_020--Hb_002388_060 Hb_170116_010 Hb_170116_010 Hb_000523_020--Hb_170116_010 Hb_000523_020--Hb_002627_060 Hb_007545_210--Hb_002388_060 Hb_000416_100 Hb_000416_100 Hb_007545_210--Hb_000416_100 Hb_007545_210--Hb_002627_060 Hb_000376_150 Hb_000376_150 Hb_007545_210--Hb_000376_150 Hb_000928_230 Hb_000928_230 Hb_126669_010--Hb_000928_230 Hb_126669_010--Hb_002627_060 Hb_126669_010--Hb_000172_610 Hb_126669_010--Hb_000376_150 Hb_001635_220 Hb_001635_220 Hb_004254_040--Hb_001635_220 Hb_004254_040--Hb_000172_610 Hb_001140_080 Hb_001140_080 Hb_004254_040--Hb_001140_080 Hb_012807_120 Hb_012807_120 Hb_004254_040--Hb_012807_120 Hb_000009_640 Hb_000009_640 Hb_004254_040--Hb_000009_640 Hb_000172_610--Hb_002627_060 Hb_000155_080 Hb_000155_080 Hb_000172_610--Hb_000155_080 Hb_098315_100 Hb_098315_100 Hb_000172_610--Hb_098315_100 Hb_002627_060--Hb_000155_080 Hb_009193_130 Hb_009193_130 Hb_002627_060--Hb_009193_130 Hb_002627_060--Hb_098315_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1307.07 54.749 9.86121 13.5204 564.538 680.948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
559.635 221.421 257.955 45.7906 4.49714

CAGE analysis