Hb_000270_410

Information

Type -
Description -
Location Contig270: 305956-310306
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28213: 305932-306061 , PASA_asmbl_28214: 307760-308148 , PASA_asmbl_28215: 308198-308418 , PASA_asmbl_28216: 308527-309361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_410 0.0 - - -
2 Hb_002685_090 0.0834553873 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
3 Hb_000041_070 0.1165179369 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
4 Hb_004206_030 0.1212966028 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
5 Hb_002000_110 0.1241728891 - - ASR-like protein 2 [Hevea brasiliensis]
6 Hb_012725_110 0.1292717016 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
7 Hb_000032_040 0.1326375021 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
8 Hb_002936_050 0.1345937459 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
9 Hb_002387_060 0.1361997663 - - conserved hypothetical protein [Ricinus communis]
10 Hb_054865_130 0.1387735663 - - acyltransferase, putative [Ricinus communis]
11 Hb_012522_030 0.1445117451 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_000120_650 0.1454292966 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
13 Hb_001213_120 0.1454640886 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
14 Hb_000367_280 0.1454745009 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
15 Hb_015934_020 0.1455826248 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
16 Hb_000419_040 0.1490768723 - - chorismate synthase [Hevea brasiliensis]
17 Hb_007810_030 0.1519611294 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
18 Hb_171554_080 0.1520994862 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
19 Hb_000078_010 0.1530308527 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
20 Hb_000345_030 0.1541271172 - - REF-like stress related protein 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000270_410 Hb_000270_410 Hb_002685_090 Hb_002685_090 Hb_000270_410--Hb_002685_090 Hb_000041_070 Hb_000041_070 Hb_000270_410--Hb_000041_070 Hb_004206_030 Hb_004206_030 Hb_000270_410--Hb_004206_030 Hb_002000_110 Hb_002000_110 Hb_000270_410--Hb_002000_110 Hb_012725_110 Hb_012725_110 Hb_000270_410--Hb_012725_110 Hb_000032_040 Hb_000032_040 Hb_000270_410--Hb_000032_040 Hb_002685_090--Hb_000041_070 Hb_015934_020 Hb_015934_020 Hb_002685_090--Hb_015934_020 Hb_002685_090--Hb_012725_110 Hb_002387_060 Hb_002387_060 Hb_002685_090--Hb_002387_060 Hb_002936_050 Hb_002936_050 Hb_002685_090--Hb_002936_050 Hb_001741_080 Hb_001741_080 Hb_000041_070--Hb_001741_080 Hb_001514_180 Hb_001514_180 Hb_000041_070--Hb_001514_180 Hb_000041_070--Hb_004206_030 Hb_060668_010 Hb_060668_010 Hb_000041_070--Hb_060668_010 Hb_000041_070--Hb_002387_060 Hb_004206_030--Hb_060668_010 Hb_004206_030--Hb_012725_110 Hb_042729_010 Hb_042729_010 Hb_004206_030--Hb_042729_010 Hb_003106_140 Hb_003106_140 Hb_004206_030--Hb_003106_140 Hb_004206_030--Hb_002387_060 Hb_075449_050 Hb_075449_050 Hb_002000_110--Hb_075449_050 Hb_002235_230 Hb_002235_230 Hb_002000_110--Hb_002235_230 Hb_002000_110--Hb_004206_030 Hb_000107_070 Hb_000107_070 Hb_002000_110--Hb_000107_070 Hb_002000_110--Hb_012725_110 Hb_012725_110--Hb_002387_060 Hb_012725_110--Hb_000041_070 Hb_000836_500 Hb_000836_500 Hb_012725_110--Hb_000836_500 Hb_002291_030 Hb_002291_030 Hb_012725_110--Hb_002291_030 Hb_011004_010 Hb_011004_010 Hb_000032_040--Hb_011004_010 Hb_001762_060 Hb_001762_060 Hb_000032_040--Hb_001762_060 Hb_001006_180 Hb_001006_180 Hb_000032_040--Hb_001006_180 Hb_000742_270 Hb_000742_270 Hb_000032_040--Hb_000742_270 Hb_004738_010 Hb_004738_010 Hb_000032_040--Hb_004738_010 Hb_002119_120 Hb_002119_120 Hb_000032_040--Hb_002119_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.898194 0.0180726 0.0135022 0.0275647 0.295164 0.632158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10691 1.23486 2.11416 0.130213 0.134391

CAGE analysis