Hb_000270_420

Information

Type -
Description -
Location Contig270: 307055-309447
Sequence    

Annotation

kegg
ID rcu:RCOM_1512810
description actin binding protein, putative
nr
ID XP_002511472.1
description actin binding protein, putative [Ricinus communis]
swissprot
ID O04532
description Formin-like protein 8 OS=Arabidopsis thaliana GN=FH8 PE=1 SV=1
trembl
ID B9R8Z7
description Formin-like protein OS=Ricinus communis GN=RCOM_1512810 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28217: 309489-309706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_420 0.0 - - actin binding protein, putative [Ricinus communis]
2 Hb_003060_070 0.1018693597 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_002067_160 0.1167250901 - - Protein MLO, putative [Ricinus communis]
4 Hb_000571_070 0.1223635427 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
5 Hb_005488_100 0.12281774 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
6 Hb_001476_100 0.1280774903 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002477_260 0.128191581 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
8 Hb_004738_090 0.129138227 - - conserved hypothetical protein [Ricinus communis]
9 Hb_162275_010 0.1311872535 - - -
10 Hb_116349_150 0.1328900107 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
11 Hb_014067_010 0.1333075148 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
12 Hb_138413_010 0.1345522749 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
13 Hb_000789_190 0.1365739969 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
14 Hb_000085_340 0.1398086512 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
15 Hb_002843_160 0.1419827933 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Jatropha curcas]
16 Hb_000028_470 0.1429637095 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
17 Hb_027751_020 0.1432101109 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
18 Hb_004126_010 0.1433119363 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
19 Hb_002609_260 0.1437050098 - - CCCH-type zinc finger protein [Hevea brasiliensis]
20 Hb_001140_160 0.144095404 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000270_420 Hb_000270_420 Hb_003060_070 Hb_003060_070 Hb_000270_420--Hb_003060_070 Hb_002067_160 Hb_002067_160 Hb_000270_420--Hb_002067_160 Hb_000571_070 Hb_000571_070 Hb_000270_420--Hb_000571_070 Hb_005488_100 Hb_005488_100 Hb_000270_420--Hb_005488_100 Hb_001476_100 Hb_001476_100 Hb_000270_420--Hb_001476_100 Hb_002477_260 Hb_002477_260 Hb_000270_420--Hb_002477_260 Hb_057183_040 Hb_057183_040 Hb_003060_070--Hb_057183_040 Hb_000025_480 Hb_000025_480 Hb_003060_070--Hb_000025_480 Hb_003060_070--Hb_000571_070 Hb_000789_190 Hb_000789_190 Hb_003060_070--Hb_000789_190 Hb_003060_070--Hb_002067_160 Hb_000085_340 Hb_000085_340 Hb_002067_160--Hb_000085_340 Hb_002067_160--Hb_005488_100 Hb_004738_090 Hb_004738_090 Hb_002067_160--Hb_004738_090 Hb_007178_010 Hb_007178_010 Hb_002067_160--Hb_007178_010 Hb_026048_090 Hb_026048_090 Hb_002067_160--Hb_026048_090 Hb_002232_180 Hb_002232_180 Hb_002067_160--Hb_002232_180 Hb_027751_020 Hb_027751_020 Hb_000571_070--Hb_027751_020 Hb_000563_540 Hb_000563_540 Hb_000571_070--Hb_000563_540 Hb_000264_190 Hb_000264_190 Hb_000571_070--Hb_000264_190 Hb_002609_260 Hb_002609_260 Hb_000571_070--Hb_002609_260 Hb_002301_320 Hb_002301_320 Hb_000571_070--Hb_002301_320 Hb_010931_100 Hb_010931_100 Hb_000571_070--Hb_010931_100 Hb_005488_100--Hb_010931_100 Hb_005488_100--Hb_002609_260 Hb_005488_100--Hb_007178_010 Hb_005488_100--Hb_000264_190 Hb_005488_100--Hb_002232_180 Hb_001017_090 Hb_001017_090 Hb_001476_100--Hb_001017_090 Hb_001476_100--Hb_002067_160 Hb_000696_110 Hb_000696_110 Hb_001476_100--Hb_000696_110 Hb_006602_020 Hb_006602_020 Hb_001476_100--Hb_006602_020 Hb_000700_090 Hb_000700_090 Hb_001476_100--Hb_000700_090 Hb_000057_060 Hb_000057_060 Hb_001476_100--Hb_000057_060 Hb_127979_010 Hb_127979_010 Hb_002477_260--Hb_127979_010 Hb_002903_110 Hb_002903_110 Hb_002477_260--Hb_002903_110 Hb_011496_010 Hb_011496_010 Hb_002477_260--Hb_011496_010 Hb_003404_030 Hb_003404_030 Hb_002477_260--Hb_003404_030 Hb_001936_050 Hb_001936_050 Hb_002477_260--Hb_001936_050 Hb_002477_260--Hb_000057_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.537 4.32638 1.31341 2.19562 27.1236 60.7379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.4649 23.6627 39.8842 3.6756 4.57702

CAGE analysis