Hb_000270_450

Information

Type -
Description -
Location Contig270: 354230-355999
Sequence    

Annotation

kegg
ID sly:101261386
description uncharacterized LOC101261386
nr
ID XP_011085792.1
description PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID K4B790
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc02g067580.2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28221: 354130-356042 , PASA_asmbl_28223: 354992-355113
cDNA
(Sanger)
(ID:Location)		 001_A21.ab1: 354266-355997 , 003_M21.ab1: 354289-355980 , 004_E13.ab1: 354265-355996 , 010_C13.ab1: 354266-355992 , 013_M15.ab1: 354266-355980 , 021_B09.ab1: 354277-355981 , 025_K17.ab1: 354266-355997 , 028_M09.ab1: 354271-355996 , 028_N08.ab1: 354248-355981 , 030_P22.ab1: 354265-355996 , 045_H20.ab1: 354248-355981 , 046_B22.ab1: 354266-355997

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_450 0.0 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
2 Hb_001009_050 0.06581675 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
3 Hb_001140_080 0.0736822428 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
4 Hb_025048_040 0.075318059 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
5 Hb_009615_110 0.0834870034 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
6 Hb_005016_030 0.086766764 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
7 Hb_000320_440 0.0867705318 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
8 Hb_000732_020 0.0881071679 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
9 Hb_006478_070 0.0884863785 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
10 Hb_006173_020 0.0892903873 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
11 Hb_000282_150 0.0917770346 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
12 Hb_001623_550 0.093882361 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
13 Hb_000322_170 0.0962414576 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
14 Hb_113216_010 0.0963130665 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
15 Hb_000212_280 0.0986481427 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
16 Hb_002149_040 0.0991888908 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001776_080 0.0992843618 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
18 Hb_001178_060 0.100512017 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
19 Hb_001523_010 0.1020931301 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
20 Hb_000172_530 0.1022381809 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_450 Hb_000270_450 Hb_001009_050 Hb_001009_050 Hb_000270_450--Hb_001009_050 Hb_001140_080 Hb_001140_080 Hb_000270_450--Hb_001140_080 Hb_025048_040 Hb_025048_040 Hb_000270_450--Hb_025048_040 Hb_009615_110 Hb_009615_110 Hb_000270_450--Hb_009615_110 Hb_005016_030 Hb_005016_030 Hb_000270_450--Hb_005016_030 Hb_000320_440 Hb_000320_440 Hb_000270_450--Hb_000320_440 Hb_018663_020 Hb_018663_020 Hb_001009_050--Hb_018663_020 Hb_001623_550 Hb_001623_550 Hb_001009_050--Hb_001623_550 Hb_001975_070 Hb_001975_070 Hb_001009_050--Hb_001975_070 Hb_001009_050--Hb_025048_040 Hb_001009_050--Hb_009615_110 Hb_000282_150 Hb_000282_150 Hb_001140_080--Hb_000282_150 Hb_012807_120 Hb_012807_120 Hb_001140_080--Hb_012807_120 Hb_006478_070 Hb_006478_070 Hb_001140_080--Hb_006478_070 Hb_003506_040 Hb_003506_040 Hb_001140_080--Hb_003506_040 Hb_005028_010 Hb_005028_010 Hb_001140_080--Hb_005028_010 Hb_000212_280 Hb_000212_280 Hb_025048_040--Hb_000212_280 Hb_000331_480 Hb_000331_480 Hb_025048_040--Hb_000331_480 Hb_012760_200 Hb_012760_200 Hb_025048_040--Hb_012760_200 Hb_025048_040--Hb_005028_010 Hb_000318_140 Hb_000318_140 Hb_009615_110--Hb_000318_140 Hb_009615_110--Hb_000320_440 Hb_002955_010 Hb_002955_010 Hb_009615_110--Hb_002955_010 Hb_006173_020 Hb_006173_020 Hb_009615_110--Hb_006173_020 Hb_001178_060 Hb_001178_060 Hb_005016_030--Hb_001178_060 Hb_000322_170 Hb_000322_170 Hb_005016_030--Hb_000322_170 Hb_002149_040 Hb_002149_040 Hb_005016_030--Hb_002149_040 Hb_005016_030--Hb_006173_020 Hb_005016_030--Hb_000320_440 Hb_001016_060 Hb_001016_060 Hb_005016_030--Hb_001016_060 Hb_001776_080 Hb_001776_080 Hb_000320_440--Hb_001776_080 Hb_000088_180 Hb_000088_180 Hb_000320_440--Hb_000088_180 Hb_000172_530 Hb_000172_530 Hb_000320_440--Hb_000172_530 Hb_000260_700 Hb_000260_700 Hb_000320_440--Hb_000260_700 Hb_003777_220 Hb_003777_220 Hb_000320_440--Hb_003777_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5369.53 1458.46 256.25 511.399 4507.82 5646.28
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2634.94 1665.32 1014.62 1122.83 162.383

CAGE analysis