Hb_000270_470

Information

Type transcription factor
Description TF Family: E2F-DP
Location Contig270: 362055-367796
Sequence    

Annotation

kegg
ID rcu:RCOM_1512760
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012080147.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
swissprot
ID Q9S7R4
description Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
trembl
ID A0A067K811
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11534 PE=4 SV=1
Gene Ontology
ID GO:0008380
description pentatricopeptide repeat-containing protein mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28226: 362040-365179 , PASA_asmbl_28227: 363005-364227 , PASA_asmbl_28228: 366571-366928 , PASA_asmbl_28229: 367149-367667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_470 0.0 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
2 Hb_001025_090 0.058393047 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
3 Hb_008225_090 0.0749630317 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
4 Hb_000789_320 0.0788572234 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
5 Hb_111036_010 0.0801903861 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]
6 Hb_171900_090 0.0865867428 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000176_020 0.0868728311 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
8 Hb_000270_310 0.0871035602 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
9 Hb_012340_090 0.0874740434 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
10 Hb_002307_180 0.0881141454 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
11 Hb_003848_040 0.0882281422 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
12 Hb_012565_070 0.0883944747 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
13 Hb_002946_190 0.0910112358 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
14 Hb_000300_260 0.0926267249 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
15 Hb_000373_050 0.0926684013 - - PREDICTED: protein WHI3 [Jatropha curcas]
16 Hb_000185_050 0.0933419165 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
17 Hb_002343_040 0.0935616816 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001623_270 0.0937610748 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
19 Hb_003647_140 0.0942575627 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
20 Hb_001863_380 0.0943854625 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_470 Hb_000270_470 Hb_001025_090 Hb_001025_090 Hb_000270_470--Hb_001025_090 Hb_008225_090 Hb_008225_090 Hb_000270_470--Hb_008225_090 Hb_000789_320 Hb_000789_320 Hb_000270_470--Hb_000789_320 Hb_111036_010 Hb_111036_010 Hb_000270_470--Hb_111036_010 Hb_171900_090 Hb_171900_090 Hb_000270_470--Hb_171900_090 Hb_000176_020 Hb_000176_020 Hb_000270_470--Hb_000176_020 Hb_004807_020 Hb_004807_020 Hb_001025_090--Hb_004807_020 Hb_001025_090--Hb_171900_090 Hb_001025_090--Hb_000176_020 Hb_001025_090--Hb_000789_320 Hb_000875_080 Hb_000875_080 Hb_001025_090--Hb_000875_080 Hb_002092_120 Hb_002092_120 Hb_008225_090--Hb_002092_120 Hb_000270_310 Hb_000270_310 Hb_008225_090--Hb_000270_310 Hb_000010_110 Hb_000010_110 Hb_008225_090--Hb_000010_110 Hb_008225_090--Hb_000176_020 Hb_008225_090--Hb_001025_090 Hb_000789_320--Hb_171900_090 Hb_000339_040 Hb_000339_040 Hb_000789_320--Hb_000339_040 Hb_001623_270 Hb_001623_270 Hb_000789_320--Hb_001623_270 Hb_000866_310 Hb_000866_310 Hb_000789_320--Hb_000866_310 Hb_001153_210 Hb_001153_210 Hb_000789_320--Hb_001153_210 Hb_002439_010 Hb_002439_010 Hb_111036_010--Hb_002439_010 Hb_111036_010--Hb_000875_080 Hb_003942_020 Hb_003942_020 Hb_111036_010--Hb_003942_020 Hb_003678_020 Hb_003678_020 Hb_111036_010--Hb_003678_020 Hb_002271_010 Hb_002271_010 Hb_111036_010--Hb_002271_010 Hb_164390_010 Hb_164390_010 Hb_171900_090--Hb_164390_010 Hb_183433_010 Hb_183433_010 Hb_171900_090--Hb_183433_010 Hb_002272_050 Hb_002272_050 Hb_171900_090--Hb_002272_050 Hb_171900_090--Hb_000176_020 Hb_000176_020--Hb_001623_270 Hb_000230_460 Hb_000230_460 Hb_000176_020--Hb_000230_460 Hb_000699_150 Hb_000699_150 Hb_000176_020--Hb_000699_150 Hb_000176_020--Hb_000789_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.09998 2.57986 5.65506 2.79026 1.84667 2.69244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15978 5.39153 1.64728 3.03087 2.64746

CAGE analysis