Hb_000270_490

Information

Type -
Description -
Location Contig270: 375360-381410
Sequence    

Annotation

kegg
ID rcu:RCOM_1512620
description betaine-aldehyde dehydrogenase, putative (EC:1.2.1.8)
nr
ID AFY98894.1
description betaine aldehyde dehydrogenase 1 [Jatropha curcas]
swissprot
ID Q9S795
description Betaine aldehyde dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=ALDH10A8 PE=2 SV=1
trembl
ID K9UV77
description Betaine aldehyde dehydrogenase 1 OS=Jatropha curcas GN=BD1 PE=2 SV=1
Gene Ontology
ID GO:0005618
description betaine aldehyde dehydrogenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28232: 375475-381334 , PASA_asmbl_28233: 375479-381226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_490 0.0 - - betaine aldehyde dehydrogenase 1 [Jatropha curcas]
2 Hb_003376_330 0.0537542245 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
3 Hb_000120_060 0.0660314295 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
4 Hb_073973_100 0.0660987481 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
5 Hb_003693_070 0.0769005731 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
6 Hb_026198_070 0.0808590588 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
7 Hb_004127_030 0.0835538402 - - putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
8 Hb_001366_370 0.0889363621 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
9 Hb_011671_040 0.0890838257 - - PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
10 Hb_023732_030 0.090235524 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
11 Hb_011930_160 0.093922975 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
12 Hb_014834_050 0.0955739481 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000329_060 0.0956967708 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
14 Hb_001252_120 0.096763334 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
15 Hb_008748_040 0.0987433256 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
16 Hb_001946_010 0.0987935845 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_000556_120 0.0994430932 - - Spastin, putative [Ricinus communis]
18 Hb_000019_030 0.1000308171 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
19 Hb_000640_170 0.1014405335 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
20 Hb_000808_280 0.1015300756 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000270_490 Hb_000270_490 Hb_003376_330 Hb_003376_330 Hb_000270_490--Hb_003376_330 Hb_000120_060 Hb_000120_060 Hb_000270_490--Hb_000120_060 Hb_073973_100 Hb_073973_100 Hb_000270_490--Hb_073973_100 Hb_003693_070 Hb_003693_070 Hb_000270_490--Hb_003693_070 Hb_026198_070 Hb_026198_070 Hb_000270_490--Hb_026198_070 Hb_004127_030 Hb_004127_030 Hb_000270_490--Hb_004127_030 Hb_003376_330--Hb_073973_100 Hb_023732_030 Hb_023732_030 Hb_003376_330--Hb_023732_030 Hb_002232_410 Hb_002232_410 Hb_003376_330--Hb_002232_410 Hb_003376_330--Hb_026198_070 Hb_003376_330--Hb_003693_070 Hb_000120_060--Hb_003693_070 Hb_010142_030 Hb_010142_030 Hb_000120_060--Hb_010142_030 Hb_000808_280 Hb_000808_280 Hb_000120_060--Hb_000808_280 Hb_001492_020 Hb_001492_020 Hb_000120_060--Hb_001492_020 Hb_002783_240 Hb_002783_240 Hb_000120_060--Hb_002783_240 Hb_000556_120 Hb_000556_120 Hb_073973_100--Hb_000556_120 Hb_002000_080 Hb_002000_080 Hb_073973_100--Hb_002000_080 Hb_073973_100--Hb_023732_030 Hb_165928_030 Hb_165928_030 Hb_073973_100--Hb_165928_030 Hb_003693_070--Hb_010142_030 Hb_003693_070--Hb_000808_280 Hb_004046_050 Hb_004046_050 Hb_003693_070--Hb_004046_050 Hb_000205_300 Hb_000205_300 Hb_003693_070--Hb_000205_300 Hb_000019_030 Hb_000019_030 Hb_003693_070--Hb_000019_030 Hb_000441_200 Hb_000441_200 Hb_026198_070--Hb_000441_200 Hb_002110_190 Hb_002110_190 Hb_026198_070--Hb_002110_190 Hb_000254_090 Hb_000254_090 Hb_026198_070--Hb_000254_090 Hb_000640_170 Hb_000640_170 Hb_026198_070--Hb_000640_170 Hb_002044_150 Hb_002044_150 Hb_026198_070--Hb_002044_150 Hb_007479_040 Hb_007479_040 Hb_026198_070--Hb_007479_040 Hb_000862_030 Hb_000862_030 Hb_004127_030--Hb_000862_030 Hb_000159_090 Hb_000159_090 Hb_004127_030--Hb_000159_090 Hb_004127_030--Hb_026198_070 Hb_011671_040 Hb_011671_040 Hb_004127_030--Hb_011671_040 Hb_001366_370 Hb_001366_370 Hb_004127_030--Hb_001366_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2822 13.5582 22.0593 38.595 28.607 26.8226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.3725 20.0865 24.6671 35.6129 16.3209

CAGE analysis