Hb_000270_500

Information

Type -
Description -
Location Contig270: 384912-385160
Sequence    

Annotation

kegg
ID pop:POPTR_0012s07750g
description POPTRDRAFT_423376; hypothetical protein
nr
ID XP_012080143.1
description PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KH50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 028_A17.ab1: 384769-385207 , 035_L15.ab1: 384769-385207

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_500 0.0 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
2 Hb_176117_010 0.1450581384 - - Cold-inducible RNA-binding protein [Morus notabilis]
3 Hb_181320_010 0.1458332824 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
4 Hb_094647_010 0.1544627027 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Jatropha curcas]
5 Hb_080530_020 0.1776334368 - - -
6 Hb_005016_150 0.1887031118 - - -
7 Hb_007827_020 0.1893990251 - - -
8 Hb_006455_080 0.1928553638 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
9 Hb_000200_040 0.1928616826 - - -
10 Hb_001722_020 0.1945026014 - - -
11 Hb_000953_060 0.1977042078 - - PREDICTED: putative phytosulfokines 6 [Vitis vinifera]
12 Hb_000248_050 0.198402893 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
13 Hb_006455_110 0.1997065526 - - bromodomain-containing protein, putative [Ricinus communis]
14 Hb_000213_060 0.1997891539 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
15 Hb_006723_020 0.2006101554 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
16 Hb_087762_010 0.2010278931 - - thioredoxin-like family protein [Hevea brasiliensis]
17 Hb_001252_170 0.2010802788 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
18 Hb_088774_010 0.204306045 - - -
19 Hb_000441_160 0.2053998399 - - ARF GTPase activator, putative [Ricinus communis]
20 Hb_000466_060 0.2056188329 - - phosphofructokinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000270_500 Hb_000270_500 Hb_176117_010 Hb_176117_010 Hb_000270_500--Hb_176117_010 Hb_181320_010 Hb_181320_010 Hb_000270_500--Hb_181320_010 Hb_094647_010 Hb_094647_010 Hb_000270_500--Hb_094647_010 Hb_080530_020 Hb_080530_020 Hb_000270_500--Hb_080530_020 Hb_005016_150 Hb_005016_150 Hb_000270_500--Hb_005016_150 Hb_007827_020 Hb_007827_020 Hb_000270_500--Hb_007827_020 Hb_176117_010--Hb_181320_010 Hb_176117_010--Hb_005016_150 Hb_144898_010 Hb_144898_010 Hb_176117_010--Hb_144898_010 Hb_000200_040 Hb_000200_040 Hb_176117_010--Hb_000200_040 Hb_183980_010 Hb_183980_010 Hb_176117_010--Hb_183980_010 Hb_181320_010--Hb_144898_010 Hb_181320_010--Hb_005016_150 Hb_004662_010 Hb_004662_010 Hb_181320_010--Hb_004662_010 Hb_000891_040 Hb_000891_040 Hb_181320_010--Hb_000891_040 Hb_009486_010 Hb_009486_010 Hb_094647_010--Hb_009486_010 Hb_001575_040 Hb_001575_040 Hb_094647_010--Hb_001575_040 Hb_000414_030 Hb_000414_030 Hb_094647_010--Hb_000414_030 Hb_006455_080 Hb_006455_080 Hb_094647_010--Hb_006455_080 Hb_006455_110 Hb_006455_110 Hb_094647_010--Hb_006455_110 Hb_000953_060 Hb_000953_060 Hb_080530_020--Hb_000953_060 Hb_000211_070 Hb_000211_070 Hb_080530_020--Hb_000211_070 Hb_000213_060 Hb_000213_060 Hb_080530_020--Hb_000213_060 Hb_006901_040 Hb_006901_040 Hb_080530_020--Hb_006901_040 Hb_080530_020--Hb_005016_150 Hb_001675_060 Hb_001675_060 Hb_005016_150--Hb_001675_060 Hb_005016_150--Hb_000213_060 Hb_001477_010 Hb_001477_010 Hb_005016_150--Hb_001477_010 Hb_003226_170 Hb_003226_170 Hb_005016_150--Hb_003226_170 Hb_000256_270 Hb_000256_270 Hb_005016_150--Hb_000256_270 Hb_000256_210 Hb_000256_210 Hb_007827_020--Hb_000256_210 Hb_002159_030 Hb_002159_030 Hb_007827_020--Hb_002159_030 Hb_000441_160 Hb_000441_160 Hb_007827_020--Hb_000441_160 Hb_024272_010 Hb_024272_010 Hb_007827_020--Hb_024272_010 Hb_007348_040 Hb_007348_040 Hb_007827_020--Hb_007348_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.0662 4.48171 4.35886 1.91971 11.4842 70.3644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.99567 8.20911 6.51115 5.47134 0.861083

CAGE analysis