Hb_000270_530

Information

Type -
Description -
Location Contig270: 419658-420872
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08220g
description POPTRDRAFT_251915; hypothetical protein
nr
ID XP_002321562.2
description hypothetical protein POPTR_0015s08220g [Populus trichocarpa]
swissprot
ID Q8YRI1
description Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=3 SV=1
trembl
ID B9IEL7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08220g PE=4 SV=2
Gene Ontology
ID GO:0016905
description vegetative incompatibility protein het-e-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_530 0.0 - - hypothetical protein POPTR_0015s08220g [Populus trichocarpa]
2 Hb_000604_050 0.1015132367 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
3 Hb_000702_040 0.1354208247 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
4 Hb_103149_010 0.1376975044 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
5 Hb_000172_150 0.1395139795 - - PREDICTED: protein UPSTREAM OF FLC [Populus euphratica]
6 Hb_000567_220 0.1415328535 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
7 Hb_003529_010 0.1425945556 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]
8 Hb_004007_190 0.1491539675 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
9 Hb_001675_260 0.1515297266 - - nitrate transporter, putative [Ricinus communis]
10 Hb_012395_260 0.1525484464 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
11 Hb_001318_180 0.1531250058 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
12 Hb_006890_050 0.1549406184 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
13 Hb_002783_210 0.1549836438 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
14 Hb_003906_150 0.1578503414 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
15 Hb_003939_090 0.1602905309 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
16 Hb_004586_230 0.1613597727 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000983_110 0.1620556332 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
18 Hb_008566_070 0.1630026443 - - conserved hypothetical protein [Ricinus communis]
19 Hb_015884_010 0.1665140741 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
20 Hb_002025_120 0.1713824686 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_530 Hb_000270_530 Hb_000604_050 Hb_000604_050 Hb_000270_530--Hb_000604_050 Hb_000702_040 Hb_000702_040 Hb_000270_530--Hb_000702_040 Hb_103149_010 Hb_103149_010 Hb_000270_530--Hb_103149_010 Hb_000172_150 Hb_000172_150 Hb_000270_530--Hb_000172_150 Hb_000567_220 Hb_000567_220 Hb_000270_530--Hb_000567_220 Hb_003529_010 Hb_003529_010 Hb_000270_530--Hb_003529_010 Hb_003906_150 Hb_003906_150 Hb_000604_050--Hb_003906_150 Hb_000604_050--Hb_003529_010 Hb_004007_190 Hb_004007_190 Hb_000604_050--Hb_004007_190 Hb_000604_050--Hb_103149_010 Hb_008566_070 Hb_008566_070 Hb_000604_050--Hb_008566_070 Hb_001610_050 Hb_001610_050 Hb_000702_040--Hb_001610_050 Hb_004586_230 Hb_004586_230 Hb_000702_040--Hb_004586_230 Hb_001587_220 Hb_001587_220 Hb_000702_040--Hb_001587_220 Hb_002639_120 Hb_002639_120 Hb_000702_040--Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_000702_040--Hb_006890_050 Hb_005892_010 Hb_005892_010 Hb_000702_040--Hb_005892_010 Hb_000733_090 Hb_000733_090 Hb_103149_010--Hb_000733_090 Hb_103149_010--Hb_000702_040 Hb_103149_010--Hb_004586_230 Hb_001016_040 Hb_001016_040 Hb_103149_010--Hb_001016_040 Hb_003939_090 Hb_003939_090 Hb_103149_010--Hb_003939_090 Hb_000860_030 Hb_000860_030 Hb_000172_150--Hb_000860_030 Hb_001255_030 Hb_001255_030 Hb_000172_150--Hb_001255_030 Hb_000378_030 Hb_000378_030 Hb_000172_150--Hb_000378_030 Hb_004757_040 Hb_004757_040 Hb_000172_150--Hb_004757_040 Hb_000705_070 Hb_000705_070 Hb_000172_150--Hb_000705_070 Hb_000567_220--Hb_000604_050 Hb_000567_220--Hb_103149_010 Hb_012395_260 Hb_012395_260 Hb_000567_220--Hb_012395_260 Hb_009476_160 Hb_009476_160 Hb_000567_220--Hb_009476_160 Hb_000567_220--Hb_004586_230 Hb_001675_260 Hb_001675_260 Hb_003529_010--Hb_001675_260 Hb_003529_010--Hb_004007_190 Hb_001318_180 Hb_001318_180 Hb_003529_010--Hb_001318_180 Hb_000021_010 Hb_000021_010 Hb_003529_010--Hb_000021_010 Hb_002783_210 Hb_002783_210 Hb_003529_010--Hb_002783_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0525123 0.53548 0.0951082 0.840096 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0503719 0.0651185

CAGE analysis