Hb_000270_600

Information

Type -
Description -
Location Contig270: 499227-504254
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08320g
description POPTRDRAFT_733232; hypothetical protein
nr
ID XP_012080129.1
description PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
swissprot
ID C0SVV6
description Calmodulin-binding protein 60 A OS=Arabidopsis thaliana GN=CBP60A PE=2 SV=1
trembl
ID A0A067KH39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_600 0.0 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
2 Hb_001766_070 0.0887692167 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000673_010 0.1093446642 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
4 Hb_000011_240 0.1116677173 - - PREDICTED: uncharacterized protein LOC105631316 [Jatropha curcas]
5 Hb_000445_210 0.1131909443 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
6 Hb_001409_060 0.1171118061 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
7 Hb_001430_020 0.1188829637 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
8 Hb_000663_080 0.1192817154 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]
9 Hb_008120_040 0.1224333666 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
10 Hb_012286_020 0.1285558295 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
11 Hb_000086_270 0.1290741314 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
12 Hb_001638_330 0.1315846071 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
13 Hb_102948_010 0.1316977385 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
14 Hb_000586_020 0.1320978505 desease resistance Gene Name: NB-ARC hypothetical protein F383_02497 [Gossypium arboreum]
15 Hb_015807_080 0.1329400976 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
16 Hb_153553_040 0.1329472549 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
17 Hb_002915_010 0.1348861247 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
18 Hb_003408_060 0.1358468414 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
19 Hb_001369_030 0.1373315246 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
20 Hb_000787_080 0.1374378233 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]

Gene co-expression network

sample Hb_000270_600 Hb_000270_600 Hb_001766_070 Hb_001766_070 Hb_000270_600--Hb_001766_070 Hb_000673_010 Hb_000673_010 Hb_000270_600--Hb_000673_010 Hb_000011_240 Hb_000011_240 Hb_000270_600--Hb_000011_240 Hb_000445_210 Hb_000445_210 Hb_000270_600--Hb_000445_210 Hb_001409_060 Hb_001409_060 Hb_000270_600--Hb_001409_060 Hb_001430_020 Hb_001430_020 Hb_000270_600--Hb_001430_020 Hb_001766_070--Hb_000673_010 Hb_000787_080 Hb_000787_080 Hb_001766_070--Hb_000787_080 Hb_000137_010 Hb_000137_010 Hb_001766_070--Hb_000137_010 Hb_001766_070--Hb_001409_060 Hb_008120_040 Hb_008120_040 Hb_001766_070--Hb_008120_040 Hb_000673_010--Hb_008120_040 Hb_005235_070 Hb_005235_070 Hb_000673_010--Hb_005235_070 Hb_000673_010--Hb_000137_010 Hb_000603_190 Hb_000603_190 Hb_000673_010--Hb_000603_190 Hb_000673_010--Hb_001409_060 Hb_000663_080 Hb_000663_080 Hb_000011_240--Hb_000663_080 Hb_006120_040 Hb_006120_040 Hb_000011_240--Hb_006120_040 Hb_000011_240--Hb_001430_020 Hb_000085_190 Hb_000085_190 Hb_000011_240--Hb_000085_190 Hb_102948_010 Hb_102948_010 Hb_000011_240--Hb_102948_010 Hb_000245_150 Hb_000245_150 Hb_000011_240--Hb_000245_150 Hb_000445_210--Hb_008120_040 Hb_153553_040 Hb_153553_040 Hb_000445_210--Hb_153553_040 Hb_004577_010 Hb_004577_010 Hb_000445_210--Hb_004577_010 Hb_155025_010 Hb_155025_010 Hb_000445_210--Hb_155025_010 Hb_015807_080 Hb_015807_080 Hb_000445_210--Hb_015807_080 Hb_001409_060--Hb_102948_010 Hb_002218_020 Hb_002218_020 Hb_001409_060--Hb_002218_020 Hb_001409_060--Hb_000663_080 Hb_001409_060--Hb_001430_020 Hb_001430_020--Hb_102948_010 Hb_001430_020--Hb_002218_020 Hb_000802_130 Hb_000802_130 Hb_001430_020--Hb_000802_130 Hb_003883_010 Hb_003883_010 Hb_001430_020--Hb_003883_010 Hb_001430_020--Hb_005235_070 Hb_000555_020 Hb_000555_020 Hb_001430_020--Hb_000555_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6429 30.613 49.0895 14.7068 5.10818 8.33034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.58753 6.90083 12.7059 7.42146 32.5549

CAGE analysis